View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_5 (Length: 696)
Name: NF5039_high_5
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 42346644 - 42346299
Alignment:
| Q |
16 |
acagaatttggtgctaggccattgacaagtgttatcgacaacttgaaccgtggacttcctcatagtcagattcctttagcatcagaacatgttggagctg |
115 |
Q |
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| T |
42346644 |
acagaatctggtactaggccattgacaagtgttaacgataactttaaccatggacttcctcatagtcagattcctcttgcatcagaacatgttggagctg |
42346545 |
T |
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| Q |
116 |
agaatactttgtaaggtggcggacatcccatggatgaaaaggctttgtcaaggcttcaagcacggatggaaagactg--aagtggatcccttgaacctct |
213 |
Q |
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| T |
42346544 |
aaaatactttacaaggtggggtacatcctgtagatgaaaaagctttgtcagggcttcaagcacggatggaacggctgaaaagtggatcccttgaccctct |
42346445 |
T |
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| Q |
214 |
gtagtgggattaaggtaaagggaaataatgtccttaccttttttagattttgagtacatatttgccattaatgccgtggcatgcaatcataatttttaat |
313 |
Q |
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| T |
42346444 |
gtagcgtgattaaggtaaagggaattaatttcctttccttccctagattttgagaacatatttgccactgatgctgtggcatgcaatcataatttttaat |
42346345 |
T |
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| Q |
314 |
gcgggtgaatatatgtctattgaatgtatagtatagtcaatagagccgtt |
363 |
Q |
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| T |
42346344 |
gcgggtggatata----tattgaatgtatagtatagttgatagagccgtt |
42346299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 7e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 8188645 - 8188465
Alignment:
| Q |
7 |
ggagcacagacagaatttggtgctaggccattgacaagtgttatcgacaacttgaaccgtggacttcctcatagtcagattcctttagcatcagaacatg |
106 |
Q |
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| T |
8188645 |
ggagcacagacagaatctggtgctaggccattgacaagtgttatcgacaacttgaaccgtggacttcctcatagtcatattcctttagcattagaacatg |
8188546 |
T |
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| Q |
107 |
ttggagctgagaatactttgtaaggtggcggacatcccatggatgaaaaggctttgtcaaggcttcaagcacggatggaaa |
187 |
Q |
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| T |
8188545 |
ttggagctgagaatactttgtaaggtggcggacatcccatggatgaaaaggctttgtcagggcttcaagcacggatggaaa |
8188465 |
T |
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