View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_52 (Length: 253)
Name: NF5039_high_52
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_52 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 37417633 - 37417397
Alignment:
| Q |
12 |
atgaatggagatgtaagtgcatttgattttaagcttcacatgattttctatatcatgtccacatattagtattaagtgttttgttaggaaccaaagaatt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
37417633 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacatattagtcttaagtgttt-gttaggaaccaaagaatt |
37417535 |
T |
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| Q |
112 |
gaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatctaattaagggtttcctcttcacagttttagaat |
211 |
Q |
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| T |
37417534 |
gaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatc----aaagggtttcctcttcacagttttagaat |
37417439 |
T |
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| Q |
212 |
gttttctcatactccaccccgtcaattgaacttggactcctt |
253 |
Q |
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| T |
37417438 |
gttttctcatactccaccccgtcaattgaacttggactcctt |
37417397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 37425165 - 37424929
Alignment:
| Q |
12 |
atgaatggagatgtaagtgcatttgattttaagcttcacatgattttctatatcatgtccacatattagtattaagtgttttgttaggaaccaaagaatt |
111 |
Q |
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| T |
37425165 |
atgaatggagatgtaagtgcatttgattttaagcttcacatagttttctatattatgtccacatattagtcttaagtgttt-gttaggaaccaaagaatt |
37425067 |
T |
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| Q |
112 |
gaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatctaattaagggtttcctcttcacagttttagaat |
211 |
Q |
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| T |
37425066 |
gaatggaaaagaataaacaattttattgaaagattgagaacggacaaaagagaataggagagaaatc----aaagggtttcctcttcacagttttagaat |
37424971 |
T |
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| Q |
212 |
gttttctcatactccaccccgtcaattgaacttggactcctt |
253 |
Q |
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| T |
37424970 |
gttttctcaaactccacccagtcaattgaacttggactcctt |
37424929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 34317906 - 34317819
Alignment:
| Q |
92 |
ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatct |
179 |
Q |
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| T |
34317906 |
ttgttaggaacctaagaattgaattgaaaataatgaactattttattgaaagattgagaaaggataaaggagaataggagagaaatct |
34317819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 10057440 - 10057358
Alignment:
| Q |
92 |
ttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagaga |
174 |
Q |
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| T |
10057440 |
ttgttaggaaccaaaaaattgatatgaaaggaacgaacaattttattgaaagattgagaaaggacaaacgagaataggagaga |
10057358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 7872146 - 7872062
Alignment:
| Q |
95 |
ttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatct |
179 |
Q |
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| T |
7872146 |
ttaggaacccaagtattgaattgaaaagaatgaacaattttattgaaatattgataaaggataaatgagaatatgagagaaatct |
7872062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 43672464 - 43672413
Alignment:
| Q |
93 |
tgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaaga |
144 |
Q |
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| T |
43672464 |
tgttaggaacccaagaattgaatggaaaagaatggacaattttattgaaaga |
43672413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 50891124 - 50891041
Alignment:
| Q |
89 |
gttttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggaga |
172 |
Q |
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| T |
50891124 |
gttttgttaggaacccaagagttaaattgaaaaaaatgagcaattttattgaaagattgagaaaggataaaggagaatgggaga |
50891041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 52127667 - 52127714
Alignment:
| Q |
95 |
ttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaa |
142 |
Q |
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| T |
52127667 |
ttaggaacccaataattgaattgaaaagaatcaacaattttattgaaa |
52127714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 30029478 - 30029391
Alignment:
| Q |
91 |
tttgttaggaaccaaagaattgaatggaaaagaataaacaattttattgaaagattgcgaacggacaaaagagaataggagagaaatct |
179 |
Q |
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| T |
30029478 |
tttgttaggaaccca-gaattgaattgaaaagagtgaatagttttatttaaagaatgagaaaggataaaatagaatatgagagaaatct |
30029391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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