View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_53 (Length: 251)
Name: NF5039_high_53
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 21008266 - 21008098
Alignment:
| Q |
1 |
tgcattattggtgtagagtttttacaccgtcaatatcataatcatcaaattatgaaaattgtttactttaatcatgacnnnnnnnnnaaaagtcacaata |
100 |
Q |
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| T |
21008266 |
tgcattattggtgtagagtttttataccgtcaatatcataatcatcaaattatgaaaattgtttactttaatcatgactatttttttaaaagtcacaata |
21008167 |
T |
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| Q |
101 |
taaatgattgtgatttgttcatagtataaaactcttcacaccaaccgcatatcaaaattaaacaagaat |
169 |
Q |
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| T |
21008166 |
taaatgattgtgatttgttcatagtataaaactcttcacaccaaccgcatattaaaattaaacaagaat |
21008098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 21008049 - 21007992
Alignment:
| Q |
185 |
tttgagtgaaatatatataggtcataccactttgaaaatgagtctcacatagtataat |
242 |
Q |
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| T |
21008049 |
tttgagtgaaatatatataggtcataccactttggaaatgaatctcacatagtataat |
21007992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 33786191 - 33786264
Alignment:
| Q |
89 |
aaagtcacaatataaatgattgtgatttgttcatagtataaaactcttcacaccaaccgcatatcaaaattaaac |
163 |
Q |
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| T |
33786191 |
aaagtcaca-tataattgattgtgatttgttgatagtataaaactttttataccgacggtttatcaaaattaaac |
33786264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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