View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_54 (Length: 251)
Name: NF5039_high_54
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 49653530 - 49653305
Alignment:
| Q |
17 |
cttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatc |
116 |
Q |
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| T |
49653530 |
cttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgttacctgatacttcaaaggttgtgaggtagcatc |
49653431 |
T |
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| Q |
117 |
cattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagatgaggaaaatgccaagaaaacaaaggaaacaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49653430 |
cattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagaagaggaaaatgccaagaaaacaaaggaaacaagc |
49653331 |
T |
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| Q |
217 |
caagatgggtaccaaagtagtataat |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
49653330 |
caagatgggtaccaaagtagtataat |
49653305 |
T |
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