View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_61 (Length: 241)
Name: NF5039_high_61
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_61 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 67 - 225
Target Start/End: Original strand, 20751055 - 20751213
Alignment:
| Q |
67 |
tagagtatcctcaaacaactgcataaactaattttttccaaattattttcaattgttaacaaattacaacnnnnnnnnnnnnnttgaagagactagttta |
166 |
Q |
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| T |
20751055 |
tagagtatcctaaaacaactgcataaactaattttttccaaattattttcaattgttaacaaataacagcaaaaaagtaaaaattgaagagactagttta |
20751154 |
T |
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| Q |
167 |
atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttg |
225 |
Q |
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| T |
20751155 |
atatttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttg |
20751213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 225
Target Start/End: Original strand, 20755640 - 20755718
Alignment:
| Q |
150 |
ttgaagagactagtttaata---tttgaccattcaaatagctactagttgttccatattaataggaaatgtgtattttg |
225 |
Q |
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| T |
20755640 |
ttgaagggactagtttaatactatttaacaattcaaagagctagtagttgttccatattaataggagatgtgtattttg |
20755718 |
T |
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