View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_high_64 (Length: 238)

Name: NF5039_high_64
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_high_64
NF5039_high_64
[»] chr5 (13 HSPs)
chr5 (17-238)||(8528774-8528995)
chr5 (21-236)||(8535333-8535548)
chr5 (21-238)||(9074777-9074994)
chr5 (21-238)||(1600340-1600554)
chr5 (21-235)||(8677637-8677851)
chr5 (23-235)||(8636701-8636913)
chr5 (21-235)||(8644044-8644258)
chr5 (21-235)||(8548151-8548365)
chr5 (57-112)||(8641242-8641297)
chr5 (128-172)||(2856974-2857018)
chr5 (128-172)||(2874584-2874628)
chr5 (24-112)||(9003305-9003393)
chr5 (128-172)||(2845147-2845191)
[»] chr4 (1 HSPs)
chr4 (17-238)||(9442935-9443156)
[»] chr7 (2 HSPs)
chr7 (21-238)||(48361906-48362128)
chr7 (46-213)||(35779694-35779861)
[»] chr1 (1 HSPs)
chr1 (21-235)||(5130638-5130853)
[»] scaffold0627 (1 HSPs)
scaffold0627 (21-116)||(4492-4587)
[»] chr6 (2 HSPs)
chr6 (21-114)||(16716179-16716272)
chr6 (129-235)||(16716299-16716405)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 8528774 - 8528995
Alignment:
17 aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528774 aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 8528873  T
117 atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
8528874 atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca 8528973  T
217 ccttcttcaaagtgttttatcg 238  Q
    ||||||||||||||||||||||    
8528974 ccttcttcaaagtgttttatcg 8528995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 8535333 - 8535548
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
8535333 ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt 8535432  T
121 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 220  Q
       | |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||    
8535433 gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt 8535532  T
221 cttcaaagtgttttat 236  Q
    ||||||||||||||||    
8535533 cttcaaagtgttttat 8535548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 9074994 - 9074777
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |||    
9074994 ttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggattacttcaaaaaacttt 9074895  T
121 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 220  Q
        |||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||||||||||||||||||    
9074894 gaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcacctt 9074795  T
221 cttcaaagtgttttatcg 238  Q
    ||||||||||||||||||    
9074794 cttcaaagtgttttatcg 9074777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 1600554 - 1600340
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |    
1600554 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct 1600455  T
121 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 220  Q
       |||||||||||||||  |||| ||||| | | ||||||  ||||||| || ||| | ||||||||   | ||| |||| ||||||||||||||||||    
1600454 gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt 1600358  T
221 cttcaaagtgttttatcg 238  Q
    |||||||||||| |||||    
1600357 cttcaaagtgttgtatcg 1600340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 8677637 - 8677851
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
8677637 ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8677735  T
121 atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 219  Q
        ||  | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||||||     
8677736 ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc 8677835  T
220 tcttcaaagtgtttta 235  Q
    ||||||||||||||||    
8677836 tcttcaaagtgtttta 8677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 8636701 - 8636913
Alignment:
23 accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat 122  Q
    ||||||||||||||||||| ||||| |||||| |||||||||  |||||||||||||| |||||||||||||  ||||| |||| ||||| | | |        
8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga 8636800  T
123 ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct 222  Q
       | | || ||||||| |||||||||||| |||  ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |||    
8636801 agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct 8636900  T
223 tcaaagtgtttta 235  Q
    |||||||||||||    
8636901 tcaaagtgtttta 8636913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 8644044 - 8644258
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    ||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| |||||||||||||  ||||| |||| ||||| | ||||     
8644044 ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc 8644142  T
121 atccg-actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct 219  Q
        | | | || ||||||||||||||||||||  ||| ||| |  ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| ||     
8644143 ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc 8644242  T
220 tcttcaaagtgtttta 235  Q
    |||||||||| |||||    
8644243 tcttcaaagtttttta 8644258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 8548365 - 8548151
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||||||| |||||||||||||| ||| | |||||||||||  | | |    
8548365 ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt 8548266  T
121 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt 220  Q
         |   ||||||||||||||| ||||||  |||||||| || || |  ||||| ||||||||||   | ||||||||| |||||| ||||||||| |    
8548265 gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct 8548166  T
221 cttcaaagtgtttta 235  Q
    |||||||||||||||    
8548165 cttcaaagtgtttta 8548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
57 tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 112  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||| ||||||||||    
8641242 tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
128 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 172  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
2857018 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2856974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
128 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 172  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||    
2874628 tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt 2874584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
24 ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa 112  Q
    |||||||| || |||||  ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| ||||||||||    
9003305 ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
128 tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt 172  Q
    |||| ||||||||||||||||||||| ||| ||| ||||||||||    
2845191 tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt 2845147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 9442935 - 9443156
Alignment:
17 aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
9442935 aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaata 9443034  T
117 atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
9443035 atttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagca 9443134  T
217 ccttcttcaaagtgttttatcg 238  Q
    ||||||||||||||||||||||    
9443135 ccttcttcaaagtgttttatcg 9443156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48362128 - 48361906
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat 115  Q
    |||||||||||||| |||||  ||||| |||||  |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||     
48362128 ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag 48362029  T
116 aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc 215  Q
    ||  |   |||||||| |||||  ||||| ||||| | | |||||| |||||||| || ||| | ||||  | | ||||||||||| |||||||||||||    
48362028 aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc 48361929  T
216 accttcttcaaagtgttttatcg 238  Q
    |||||||||||||||||||||||    
48361928 accttcttcaaagtgttttatcg 48361906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
46 tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa 145  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | |||   ||| ||||| ||||||||||||    
35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa 35779793  T
146 ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggca 213  Q
    ||||| | |||||||| ||||||||  ||||| ||||||||||| | ||||||||| |||||||||||    
35779794 ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca 35779861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 5130638 - 5130853
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt 120  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| ||||||||||  |  |||    
5130638 ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt 5130737  T
121 atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct 219  Q
       | | ||||||||||||||||||||||| | | |||||| || ||||| | || ||  |||||| ||| |||||||||||  |||||||||||||||     
5130738 gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc 5130837  T
220 tcttcaaagtgtttta 235  Q
    ||||||||||||||||    
5130838 tcttcaaagtgtttta 5130853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 4492 - 4587
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata 116  Q
    ||||||||||||||||||||  |||||||||||| |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||||||||||    
4492 ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata 4587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
21 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 114  Q
    ||||||||||||||||||||  |||||||||||  |||||||||   ||||||||||||| |||||||||||||| ||||| ||||||| ||||    
16716179 ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa 16716272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
129 cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag 228  Q
    ||||||||||||||||   ||||  |||||||| | ||| || ||||| ||||||||||     ||||||||| |||||| | ||||||| |||||||||    
16716299 cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag 16716398  T
229 tgtttta 235  Q
    |||||||    
16716399 tgtttta 16716405  T

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