View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_71 (Length: 236)
Name: NF5039_high_71
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_71 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 699264 - 699486
Alignment:
| Q |
14 |
gaatcgaaggttaaaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcc |
113 |
Q |
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| T |
699264 |
gaatcaaaggttaaaaaatggtgggaagaggaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcc |
699363 |
T |
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| Q |
114 |
cttttccttacacgaatggttgccttcatttaggccatgcattttctctttccaagttggaattcgcagcggctttttaccgattgagcggcaccaatgt |
213 |
Q |
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| T |
699364 |
cttttccttacacgaatggttaccttcatttaggccatgcattttctctttccaagttggaattcgcagcagctttttaccgattgagaggcgccaatgt |
699463 |
T |
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| Q |
214 |
gcttctgccatttgcctttcatt |
236 |
Q |
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| T |
699464 |
gcttctgccatttgcctttcatt |
699486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 697186 - 697338
Alignment:
| Q |
27 |
aaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcccttttccttacac |
126 |
Q |
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| T |
697186 |
aaaattggtgggaagaggaagatgatttcatatcataacgcggttaaaaccctccaaaactaggtgaattgttttttggcaactttccttttccttacac |
697285 |
T |
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| Q |
127 |
gaatgg-ttgccttcatttaggccatgcattttctctttccaagttggaattc |
178 |
Q |
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| T |
697286 |
gaatggtttaccttcatttaggccatgtatcttctctgtccaagttggaattc |
697338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 23262871 - 23262717
Alignment:
| Q |
14 |
gaatcgaaggttaaaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcc |
113 |
Q |
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| T |
23262871 |
gaatcaaaagttcaaaaatggtgggaagagaaacaagttttcaaatctgaacccggtaacaaaccacctcaagaaggtgaaaaattcttcgggaatttcc |
23262772 |
T |
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| Q |
114 |
cttttccttacacgaatggttgccttcatttaggccatgcattttctctttccaa |
168 |
Q |
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| T |
23262771 |
cttttccttatatgaacggttacttacatttaggtcatgctttttcgctttccaa |
23262717 |
T |
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