View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_high_8 (Length: 599)
Name: NF5039_high_8
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 15 - 593
Target Start/End: Complemental strand, 29207941 - 29207360
Alignment:
| Q |
15 |
catatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcacacaaatgtgtgacgaatcataattgacataatataaaagtatata |
114 |
Q |
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| T |
29207941 |
catatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcacacaaatgtgtgacgaatcataattgacataatataaa-----gta |
29207847 |
T |
|
| Q |
115 |
tattttagaaaagcatgcatacgac----atatgtgatatattgaaagtacaactaacctaacaaagtttatccatgcaactttctacttgtcatcgttt |
210 |
Q |
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| T |
29207846 |
tattttagaaaagcatgcatacgacatatatatgtgatatattgaaagtacaactaacctaacaaagtttatccatgcaactttctacttgtcatcattt |
29207747 |
T |
|
| Q |
211 |
ctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagtattatgctacaaatgatagatatattgaaccactagttggtaagtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29207746 |
ctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagtattatgctacaaatgatagatatattgaaccactatttggtaagtg |
29207647 |
T |
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| Q |
311 |
ttgatttgcttctatatatagaaagacaaattcctattttcaaataattttgaaaaaggtggtcttgatatgtcatactttagatagttgttataggcat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207646 |
ttgatttgcttctatatatagaaagacaaattcctatttataaataattttgaaaaaggtggtcttgatatgtcatactttagatagttgttataggcat |
29207547 |
T |
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| Q |
411 |
ccacacttaattttgcactcaa----atatttcttttaagttggttagacatgatatatattattggaccacaattatttagatcaagtgcattaccaac |
506 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207546 |
ccacgcttaattttgcactcaaatatatatttcttttaagttggttagacctgatatatattattggaccacaattatttagatcaagtgcattaccaac |
29207447 |
T |
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| Q |
507 |
aacactatatcacataattagcactttttgcctcttttactattattactattataatataataatgctttaataatcctttctctg |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207446 |
aacactatatcacataattagcactttttgcctcttttactattattactattataatataataatgctttaataatcctttctctg |
29207360 |
T |
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