View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_1 (Length: 742)

Name: NF5039_low_1
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_1
NF5039_low_1
[»] chr2 (11 HSPs)
chr2 (4-486)||(44748256-44748741)
chr2 (310-486)||(44749139-44749314)
chr2 (100-240)||(35160613-35160752)
chr2 (302-404)||(44625133-44625235)
chr2 (265-414)||(44615886-44616034)
chr2 (314-364)||(39379548-39379598)
chr2 (311-352)||(39131282-39131323)
chr2 (293-349)||(2363527-2363583)
chr2 (312-364)||(39372205-39372257)
chr2 (320-370)||(39419835-39419885)
chr2 (302-351)||(39493082-39493131)
[»] scaffold0283 (1 HSPs)
scaffold0283 (255-336)||(3434-3515)
[»] chr8 (7 HSPs)
chr8 (255-336)||(44947455-44947536)
chr8 (170-237)||(4929775-4929841)
chr8 (170-239)||(21581249-21581317)
chr8 (170-237)||(4929336-4929402)
chr8 (628-716)||(44951700-44951788)
chr8 (13-107)||(16251708-16251803)
chr8 (255-292)||(45343688-45343725)
[»] chr6 (5 HSPs)
chr6 (170-239)||(15652745-15652813)
chr6 (170-239)||(15670577-15670645)
chr6 (170-237)||(15887813-15887878)
chr6 (188-239)||(15888252-15888302)
chr6 (184-237)||(4749184-4749236)
[»] chr3 (2 HSPs)
chr3 (170-239)||(36143818-36143886)
chr3 (185-237)||(10026838-10026889)
[»] scaffold0011 (1 HSPs)
scaffold0011 (170-235)||(19017-19082)
[»] chr4 (3 HSPs)
chr4 (170-237)||(13923714-13923780)
chr4 (170-237)||(13924134-13924200)
chr4 (1-107)||(14275807-14275914)
[»] chr5 (2 HSPs)
chr5 (255-368)||(17061170-17061284)
chr5 (682-724)||(12264711-12264753)
[»] chr7 (1 HSPs)
chr7 (174-239)||(18269144-18269206)


Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 4 - 486
Target Start/End: Original strand, 44748256 - 44748741
Alignment:
Q  4 atttattgatttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcgaaaatttacatatgaaa 102  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  44748256 atttattgttttatttcatttatacaccaaaatgttgtatgctaaaatttggaggattatttaacgaaccatagtggcaatcgaaaatttacatatgaaa 44748355  T
Q  103 ttactttggtgagctaaccgaaaactttggcaaccaaatggtaatgaatttcttaannnnnnnnnnn--aataaacattgtgtccttattgtgactaatc 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||| ||| |||||    
T  44748356 ttactttggtgagctaaccaaaaactttggcaaccaaatggtaatgaatttcttaatttttttttttttaataaacattgtgtccttattatgattaatc 44748455  T
Q  201 aagtaaaaaatttattgacagttataatcaactttaaaatgtagcctaaataagtttttgttagcaagaatttatttagcctacattctagaagttttta 300  Q
    ||||||||| | ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  44748456 aagtaaaaattctattgatggttataattaactttaaaatgtagcctaaataagtttttgttagcaagaacttatgtagcctacattctagaagttttta 44748555  T
Q  301 agaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactgggaagaatcaacaagtttt 400  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44748556 tgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgattgggaagaatcaacaagtttt 44748655  T
Q  401 tgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748656 tgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 44748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 310 - 486
Target Start/End: Complemental strand, 44749314 - 44749139
Alignment:
Q  310 tttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactgggaagaatcaacaagtttttgcactagg 409  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||    
T  44749314 ttttttttacacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactagg 44749216  T
Q  410 aaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 486  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749215 aaaatctaaaagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 44749139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 35160752 - 35160613
Alignment:
Q  100 aaattactttggtgagctaaccgaaaactttggcaaccaaatggtaatgaatttcttaannnnnnnnnnnaataaacattgtgtccttattgtgactaat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||| |||||||||||||||||    
T  35160752 aaattactttggtgagctaaccgaaaactttggcaaccaaatggtattgaatttcttaatttttttttc-aataaacattgtctccttattgtgactaat 35160654  T
Q  200 caagtaaaaaatttattgacagttataatcaactttaaaat 240  Q
    |||||||||| | |||| |||||||||||||||||||||||    
T  35160653 caagtaaaaattctattcacagttataatcaactttaaaat 35160613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 44625133 - 44625235
Alignment:
Q  302 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactgggaagaatcaacaagttttt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| |||||||||||    
T  44625133 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagttttt 44625232  T
Q  402 gca 404  Q
    |||    
T  44625233 gca 44625235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 265 - 414
Target Start/End: Original strand, 44615886 - 44616034
Alignment:
Q  265 caagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 364  Q
    |||||| |||||||||||||||| |||||||||  | || |||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||    
T  44615886 caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttg 44615984  T
Q  365 attcagttacttgactgggaagaatcaacaagtttttgcactaggaaaat 414  Q
    ||||||||| ||| | | |||| |||||||||||| |||||||| |||||    
T  44615985 attcagttaattggccgagaaggatcaacaagtttctgcactagaaaaat 44616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 39379598 - 39379548
Alignment:
Q  314 tcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 364  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttg 39379548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 39131282 - 39131323
Alignment:
Q  311 ttttcttacaccttgcagattttgttgagaatcttatcaaga 352  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  39131282 ttttcttacaccttgcagattttgtcgagaatcttttcaaga 39131323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 2363527 - 2363583
Alignment:
Q  293 agtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatca 349  Q
    |||||| | |||||||| ||||| | |||||||||||||||||| ||||||||||||    
T  2363527 agttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatca 2363583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 39372205 - 39372257
Alignment:
Q  312 tttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 364  Q
    |||||| ||||||||||||||||||||||||||||| | || |||| ||||||    
T  39372205 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttg 39372257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 39419885 - 39419835
Alignment:
Q  320 accttgcagattttgttgagaatcttatcaagatgaagaaatttgattcag 370  Q
    |||| ||||||||||||||||||||||| | || |||| ||||||||||||    
T  39419885 acctcgcagattttgttgagaatcttataaggaggaagcaatttgattcag 39419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 39493131 - 39493082
Alignment:
Q  302 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaag 351  Q
    |||||| | |||||||||||||||||| ||||||  ||||||||||||||    
T  39493131 gaagtggaattttcttacaccttgcaggttttgtcaagaatcttatcaag 39493082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 3515 - 3434
Alignment:
Q  255 tttttgttagcaagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgtt 336  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||| |  ||||||||||||||||||||||||||||||||||    
T  3515 tttttgttaacaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt 3434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 44947536 - 44947455
Alignment:
Q  255 tttttgttagcaagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgtt 336  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||| |  ||||||||||||||||||||||||||||||||||    
T  44947536 tttttgttaacaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt 44947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4929775 - 4929841
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  4929775 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 4929841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 21581249 - 21581317
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    ||||||||||||| | | |||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  21581249 aataaacattgtgacttaattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 21581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4929336 - 4929402
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    |||||||||| || |||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||    
T  4929336 aataaacattatgaccttattgtgacta-tcaattaaaaaaattattgataattataatcaactttaa 4929402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 716
Target Start/End: Original strand, 44951700 - 44951788
Alignment:
Q  628 aaaaaaccaacaagcttcatttgtaaaatttccaagtcaaactcaatcacaaagtaatacattacacttccagaagcaaaatcaaagga 716  Q
    |||||| ||||||||||| |||| |||| ||| |  || |||||| |||  || ||| || ||||||||||||||||||||||||||||    
T  44951700 aaaaaaacaacaagcttcctttgaaaaacttctagatcgaactcattcatcaaataacacgttacacttccagaagcaaaatcaaagga 44951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 16251708 - 16251803
Alignment:
Q  13 tttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcgaaaatttacatatgaaattact 107  Q
    |||||||||| || ||| ||||||||| |  ||||||||| | |||| ||||||| |||| | | || ||| ||||||||||||||||||||||||    
T  16251708 tttatttcatatacacatcaaaatgttatttgctaaaattcgaaggaatatttaatgtactagaatgtcaaccgaaaatttacatatgaaattact 16251803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 45343688 - 45343725
Alignment:
Q  255 tttttgttagcaagaatttatttagcctacattctaga 292  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  45343688 tttttgttaacaagaacttatttagcctacattctaga 45343725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 15652745 - 15652813
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15652745 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15652813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 15670577 - 15670645
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15670577 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15670645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 15887878 - 15887813
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||||||||| ||||||||||||||||    
T  15887878 aataaacattgtgaccttattgtgacta-tcaattaaaaa-tttattgacaattataatcaactttaa 15887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 15888302 - 15888252
Alignment:
Q  188 attgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15888302 attgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15888252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 4749184 - 4749236
Alignment:
Q  184 ccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    |||||||||||||  |||| ||||||||||||||| | ||||||||||||||||    
T  4749184 ccttattgtgactg-tcaattaaaaaatttattgataattataatcaactttaa 4749236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 36143886 - 36143818
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  36143886 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 36143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 10026889 - 10026838
Alignment:
Q  185 cttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  10026889 cttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 10026838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 19017 - 19082
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaacttt 235  Q
    ||||||||||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||    
T  19017 aataaacattgcgtccttattgtgactaataaagtaaaaattctattgacaattataatcaacttt 19082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 13923780 - 13923714
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  13923780 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 13923714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 13924200 - 13924134
Alignment:
Q  170 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 237  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||| | ||||||||||||||||    
T  13924200 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgataattataatcaactttaa 13924134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 14275807 - 14275914
Alignment:
Q  1 tgcatttattgatttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcgaaaatttacatatg 99  Q
    |||||||| || ||||||| || || ||| ||||||||| |  ||||||||| |||||| ||||| | |||||| | || ||| ||||||||||||||||    
T  14275807 tgcatttaatgttttattttatatacacatcaaaatgttatttgctaaaattcggaggagtatttcatgtaccagaatgacaaccgaaaatttacatatg 14275906  T
Q  100 aaattact 107  Q
    ||||||||    
T  14275907 aaattact 14275914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 255 - 368
Target Start/End: Original strand, 17061170 - 17061284
Alignment:
Q  255 tttttgttagcaagaatttatttagcctacattctag-aagtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagat 353  Q
    ||||||||| || ||| ||||||| ||| || ||||| || |||| | |||||||| |||| |||  | ||||||||||||||||||||||||||||||     
T  17061170 tttttgttaacaggaacttatttaacctccactctagtaaattttgatgaagtgaaattttgttatccattgcagattttgttgagaatcttatcaagag 17061269  T
Q  354 gaagaaatttgattc 368  Q
    |||| ||||||||||    
T  17061270 gaaggaatttgattc 17061284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 724
Target Start/End: Complemental strand, 12264753 - 12264711
Alignment:
Q  682 taatacattacacttccagaagcaaaatcaaaggataaacaca 724  Q
    |||||||||||| |||||||| |||| ||||||||||||||||    
T  12264753 taatacattacaattccagaatcaaactcaaaggataaacaca 12264711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 18269144 - 18269206
Alignment:
Q  174 aacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 239  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  18269144 aacattgtgaccttattgtgact-atcaaataaaaaatttattgacaat--taatcaactttaaaa 18269206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University