View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_12 (Length: 531)
Name: NF5039_low_12
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 515
Target Start/End: Complemental strand, 834961 - 834451
Alignment:
| Q |
13 |
aatatacaaataagtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaa |
112 |
Q |
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| T |
834961 |
aatatacaaaaaggtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaa |
834865 |
T |
|
| Q |
113 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagcttt-----gtatatacctctaagtcttccttgttgtcctctcctttgcaat |
207 |
Q |
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| T |
834864 |
tcaaagggaatgtgattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcctctcctttgcaat |
834765 |
T |
|
| Q |
208 |
ctgtatatatacttaacaatttcatcctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattc |
307 |
Q |
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| T |
834764 |
ccgtatatatactcgacaatttcatcctgctccgtagcattgaaaacatcggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattc |
834665 |
T |
|
| Q |
308 |
tttcaatgaaggtaaaatcttttttgcattgaatttcaga---ataacggatatgctcctttcgctcttccgataactcatttttagatgaagaaacatc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
834664 |
tttcaatgaaggtaaaatcttttttgcattgaatttcagaattataacggatatgctccttttgctcttccgataactcatttttagatgaagaaacatc |
834565 |
T |
|
| Q |
405 |
cacagtttcatcatttaacaataattcagtatcagactgcttgctttctttcaga---tatttaattgaagaatcaaaattgggtttgttatccttcact |
501 |
Q |
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| T |
834564 |
cacagttccatcatttaacaataattcagtatcagactgcttgctttctttcagatattatttaattgaagaatcaaaattgggtttgttatccttcact |
834465 |
T |
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| Q |
502 |
gtgagagtagaatc |
515 |
Q |
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| T |
834464 |
gtgagagtagaatc |
834451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 34 - 310
Target Start/End: Complemental strand, 813244 - 812973
Alignment:
| Q |
34 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
133 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
|
| Q |
134 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatacttaacaatttcatc |
233 |
Q |
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||||||||||| ||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||| | ||||||||||| |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcctctccgttgcaatatgtatatatagtcaacaatttcatt |
813050 |
T |
|
| Q |
234 |
ctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattcttt |
310 |
Q |
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|||||||||||||||||| |||| | |||||||||||||||||| | ||||||||| ||||| || ||||| |||| |
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| T |
813049 |
ctgctccgtagcattgaagacactgctgtgaagttcaagaccctctaacaaatttatatctcttccgttgatccttt |
812973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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