View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_14 (Length: 506)
Name: NF5039_low_14
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 14259808 - 14260038
Alignment:
| Q |
18 |
tattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaa |
117 |
Q |
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| T |
14259808 |
tattctccatgatcattttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagtta |
14259907 |
T |
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| Q |
118 |
tggaa----atgtaattaacaaatttcacaatttcactaaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcaga |
212 |
Q |
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||||| | |||||||||| |||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||| |||||| ||| || |||||| |
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| T |
14259908 |
tggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcaga |
14260007 |
T |
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| Q |
213 |
atcacggtaatcataccaagatgttattcaa |
243 |
Q |
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|||||||| | ||||||||||||||||||| |
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| T |
14260008 |
atcacggtgcttataccaagatgttattcaa |
14260038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 14265336 - 14265447
Alignment:
| Q |
18 |
tattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaa |
117 |
Q |
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| T |
14265336 |
tattcttcatgaccattttgtagatgacttgaccgattttatactat--ggatcttttgacaattcacgtgtggtggtttttcttggaaagatcgagtta |
14265433 |
T |
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| Q |
118 |
tggaaatgtaatta |
131 |
Q |
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| T |
14265434 |
tggaaatgtaatta |
14265447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 22146162 - 22145934
Alignment:
| Q |
18 |
tattctccatggtcattttgtggatgacttgatcgattttatactatctggatcttctaccaatgcatgtgtggtggtttttcttggaaagatcaagtaa |
117 |
Q |
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| T |
22146162 |
tattctccatggccgttttgtggatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaatta |
22146063 |
T |
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| Q |
118 |
tggaaatgtaattaacaaatttcacaatttcact--aaaaaaggttaaaactcatagctaatgtatttaattaaatccaggga-acccacttttcagaat |
214 |
Q |
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||| || |||||||||||||||||||| | | | |||||| |||||||||| ||||||| |||||| |||||||||| | ||| ||| ||||| || |
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| T |
22146062 |
tggtaaggtaattaacaaatttcacaaatccggtaaaaaaaaaattaaaactcaaagctaatatatttaggtaaatccaggcatacctactattcaggat |
22145963 |
T |
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| Q |
215 |
cacggtaatcataccaagatgttattcaa |
243 |
Q |
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| T |
22145962 |
cacgataattataccaagatgttattcaa |
22145934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 407 - 499
Target Start/End: Complemental strand, 28537037 - 28536945
Alignment:
| Q |
407 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
499 |
Q |
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| T |
28537037 |
agatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctctatttacattccatacctttatagtataat |
28536945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 35686936 - 35686850
Alignment:
| Q |
413 |
agttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
499 |
Q |
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| T |
35686936 |
agttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctctatttatattccatacctttatagtataat |
35686850 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 7723136 - 7723059
Alignment:
| Q |
407 |
agatgaagttatggaaaatacaaatgcaatatgtttacggaagcatttatgtctttgatcctctatttatattccata |
484 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
7723136 |
agatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtctttgatcctatatttatattccata |
7723059 |
T |
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