View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_17 (Length: 438)
Name: NF5039_low_17
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_17 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 1313569 - 1313981
Alignment:
| Q |
17 |
tctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1313569 |
tctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacggacgaactctcctgaacaaatcatgttagcatcaatgcttaaaa |
1313668 |
T |
|
| Q |
117 |
caacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
1313669 |
caacaccaagcactatagcaatgtttcaaagtgcgaaccagattacaatagctccttttccctgggaactagaaggtctatgcccaaaaaattgcaagca |
1313768 |
T |
|
| Q |
217 |
ctataccaaggctgtgtttagattgacaaacgggatgaaatggaatcgtaaaaactataaaatagttgaattctttaaaataggatatgatggaacaaac |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
1313769 |
ctataccaaggctgtgtttagattgacaaacaggatgaaatggaatcgtaaaaactataccatagttgaattctttaaaataggatatgatggaacgaac |
1313868 |
T |
|
| Q |
317 |
cccatcccattccatcgaatacctagcttttttcttccactcaaatttggggaataataaaattaaacgtgtgtttttctgcattcaattgttaaatatc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1313869 |
cccatcccattccatcgaatacctagcttttttcttccactcaaatttggggaataataaaattaaacgtgtgtttttctgcattcaatcgttaaatatc |
1313968 |
T |
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| Q |
417 |
tgaacagtataat |
429 |
Q |
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|||||||||||| |
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| T |
1313969 |
cgaacagtataat |
1313981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 1294558 - 1294757
Alignment:
| Q |
17 |
tctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaa |
116 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
1294558 |
tctttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatcaatgcttaaaa |
1294657 |
T |
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| Q |
117 |
caacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1294658 |
caacaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
1294757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 22468 - 22667
Alignment:
| Q |
17 |
tctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatcaatgcttaaaa |
116 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
22468 |
tctttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatcaatgcttaaaa |
22567 |
T |
|
| Q |
117 |
caacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22568 |
caacaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaaattgcaagca |
22667 |
T |
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