View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_19 (Length: 421)
Name: NF5039_low_19
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 41228194 - 41228589
Alignment:
| Q |
17 |
tttctgatgtatattaaaagaaacataatatcaagctatcttcaagcattgttttcaaatttctgccatggcagattttgtgccagccagcataggcggc |
116 |
Q |
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| T |
41228194 |
tttctgatgtatattaaaagaaacataatatcaagctatcttcaagcagtgttttcaaatttctgccatggcagattttgtgccagccagcataggcggc |
41228293 |
T |
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| Q |
117 |
aacaactatgatatgtgtcatgtgtccacgatcggccgcaacgcgatgtttatatggagaattttggctggcagccataatgcgccatcagccattgata |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41228294 |
aacaactatgatatgtgtcatgtgtccacgattggccgcaacgcgatgtttatatggagaattttggctggcagccataatgcgccatcagccattgata |
41228393 |
T |
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| Q |
217 |
acaaacactaatggatcgagtatatctatcataatatatgtatatgaaaggtaacacgcacatctgataaattagttgtcacatgctttgatatgaatgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41228394 |
acaaacactaatggatcgagtatatctatcataatatatgtatatgaaaggtaacacgcacatctgataaattagttgtcacatgctttgatatgaatgg |
41228493 |
T |
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| Q |
317 |
ttccagcaatgttagtaggtcactagacttcgttaattcaatcaaacagtcccattgcttttccatctccgaaatatccgtcgcactgagaattat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41228494 |
ttccagcaatgttagtaggtcactagacttcgttaattcaatcaaacagtcccattgcttttccatctccgaaatatccgtcgcactgagaattat |
41228589 |
T |
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