View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_2 (Length: 737)
Name: NF5039_low_2
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 641
Target Start/End: Complemental strand, 53425019 - 53424378
Alignment:
| Q |
1 |
attgttttgggtagtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaannnnnnnnnnnnnnnnnnnnnnnnncaatgatatatttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53425019 |
attgttttgggtagtaacaaagttatcaaggtacaatctatagcgctctgcggtatatcaatttattttttaatttttttaattttcaatgatatatttc |
53424920 |
T |
|
| Q |
101 |
tcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaaga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424919 |
tcatgtttgataattgttattgttaagggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaaga |
53424820 |
T |
|
| Q |
201 |
caactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaataaattaacttaaacttgtttgctgggcataattaatcnnnnnnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
53424819 |
caactactgcagatttagctgaagcaaggtacgtaagcatgcataaccataacaattaattaacttaaacttgtttgttgggcataattaatcaaaaaaa |
53424720 |
T |
|
| Q |
301 |
-ttattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggt |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424719 |
attattattgtttgttaaatgcaggatgtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggt |
53424620 |
T |
|
| Q |
400 |
tacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgatt |
499 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53424619 |
tacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatgact |
53424520 |
T |
|
| Q |
500 |
tcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggt |
599 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424519 |
tcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaatttacggt |
53424420 |
T |
|
| Q |
600 |
atatcaagaagattaatggatatacaccatcaatataaagtt |
641 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424419 |
atatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 328 - 571
Target Start/End: Complemental strand, 53431843 - 53431594
Alignment:
| Q |
328 |
tgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcata---gatgatggttacacaatctatgacaagattaaaa |
424 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||| ||| | || |||| ||||||| |
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| T |
53431843 |
tgtcacccaaattcattaaataagaaaaaagtcaaaggaaagattgtcatttgtgatggaataagtgatgatgattactcaaccaataacaaaattaaaa |
53431744 |
T |
|
| Q |
425 |
tggtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat---gatttcccagcaaccgtggtaagaac |
521 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |||||| || |||| | | | | |||| || ||||||||||| ||||||||| | |
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| T |
53431743 |
cggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaacagtggtaagatc |
53431644 |
T |
|
| Q |
522 |
aaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
571 |
Q |
| |
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|||||||| ||||||| |||||||||| | |||||||||||||||||||| |
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| T |
53431643 |
aaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 632 - 724
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
632 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 327 - 585
Target Start/End: Original strand, 48373873 - 48374134
Alignment:
| Q |
327 |
gtgtcacccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatggcatagatgatggttacacaatctatgacaagattaaaatg |
426 |
Q |
| |
|
|||||| |||| ||||||||||| ||| ||||| ||||||| |||||||| || ||||| |||||| || ||| ||| | |||| || |||| | | |
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| T |
48373873 |
gtgtcatccaagttcattagataagaaaaaagttgaaggaaatattgtcatctgcgatggggtagatggtgattattcaaccgatgaaaaaattaggacg |
48373972 |
T |
|
| Q |
427 |
gtgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaacaa |
523 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||| || |||| | ||||| | ||||| | ||||||||||| ||||||||| ||| |
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| T |
48373973 |
gtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatcaa |
48374072 |
T |
|
| Q |
524 |
aagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
585 |
Q |
| |
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|||||| || |||| ||||| |||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
48374073 |
aagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 48373647 - 48373753
Alignment:
| Q |
126 |
agggtcaagccataaatttcacccctctttcaaaatctccccattatccactggtaaccggcgaggctgtcaagacaactactgcagatttagctgaagc |
225 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||| || |||| || || ||| |||||||||||||| || ||| ||||||| |
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| T |
48373647 |
agggtcaagccataaatttctcccctctttcaaaatctgccgattatccattgataactggaaagtctgctaagacaactactgctgacttaactgaagc |
48373746 |
T |
|
| Q |
226 |
aaggtac |
232 |
Q |
| |
|
||||||| |
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|
| T |
48373747 |
aaggtac |
48373753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 26096577 - 26096526
Alignment:
| Q |
334 |
ccaaattcattagatacgaacaaagtcaaaggaaagattgtcatatgtgatg |
385 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||||||||||||||||||||| |
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|
| T |
26096577 |
ccaagttcattagacaagaaaaaagtcaaaggaaagattgtcatatgtgatg |
26096526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 581
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
536 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
581 |
Q |
| |
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|||| |||||||||||||||||||||||||| ||||| |||||||| |
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| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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