View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_20 (Length: 416)
Name: NF5039_low_20
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 49813099 - 49812706
Alignment:
| Q |
1 |
acagatcacaagtttttgccggggtaaatgcatacgatatttgcaatttggctatatagtacatatatttggtatttatatctcacaggtgtacctgata |
100 |
Q |
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| T |
49813099 |
acagatcacaagtttttgccggggtaaatgcatacgatttttgcaatttggctatatagtacatatatttggtatttatatctcacaggtgtacctgata |
49813000 |
T |
|
| Q |
101 |
gaactatatatacttttttaaattattaactgttttgttatattaaatatgtgatattatagtggtttactaacatgcatgtacatgttaattcgttgat |
200 |
Q |
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| T |
49812999 |
gaactatatatacttttttaaattattaactgttttgttatattaaatatgtgatattatagtggtttactaacatgcatgtacatgttaattcgttgat |
49812900 |
T |
|
| Q |
201 |
ttagatatcataaaatagtttcaattggcaatagaatttacgttagtataagtattagttggcttcaatatagttagtgattaatcctgaacggcgagtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49812899 |
ttagatatcataaaatagtttcaattggcaatagaatttacattagtataagtattagttggcttcaatatagttagtgattaatcctgaacggcgagtt |
49812800 |
T |
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| Q |
301 |
gtcaatactacggtcggttgtcctttagctagataaagtactatcaactgtgccaatagaacaaattcatgacatttggatcccattttgggag |
394 |
Q |
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| T |
49812799 |
gtcaatactacggtcggttgtcctttagctagataaagtactatcaactgtgccaatagaacaaattcatgacatttggatcccattttgggag |
49812706 |
T |
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