View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_23 (Length: 383)
Name: NF5039_low_23
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 15606352 - 15605971
Alignment:
| Q |
9 |
gaagaatatcgaacgtgagacttggaaaggaactttctctaaggtctcaaaccaactttgttagtcatgccaacccaaatgggttacaatgcaagttaat |
108 |
Q |
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| T |
15606352 |
gaagaaaatcgaacgtgagactttgaaaggaactttctccaaggtctcaaaccaacatcgttagtcatgccaacccaagtgaattacaatgcgagttaat |
15606253 |
T |
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| Q |
109 |
tgatgtatacttataccaaaatacctttagttaaatcatttttgtttcaccacc--nnnnnnntatatcatttttgttttacaaattctca---tttttc |
203 |
Q |
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| T |
15606252 |
tgatgtatacttataccaaaatacctttagttaaatcatttttgtttcaccaccaaaaaaaaaaatatcatttttgtttcacaaattctcattttttttc |
15606153 |
T |
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| Q |
204 |
aatacaacgagcataaataatagtagtctgtatagttgaaaaacaaatgtcagttaaatcttgaattttaaaacataatt-------------------a |
284 |
Q |
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| T |
15606152 |
aatacaacgagcataaataatagtagtctgtatagttgaaaaacaaatgtcagttaaatcttgaattttaaataataattattttgaaacaaaaataaaa |
15606053 |
T |
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| Q |
285 |
tgtaaaactacagatgattttgaaacatggctagtgattccatacactgggagaggaaaagtgattacaatttcgttaaaca |
366 |
Q |
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| T |
15606052 |
tgtaaaactacagatgattttgaaacatggctagtgattccatacactgggagaggaaaagtgattacaatttcgttaaaca |
15605971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 36807105 - 36807143
Alignment:
| Q |
233 |
gtatagttgaaaaacaaatgtcagttaaatcttgaattt |
271 |
Q |
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| T |
36807105 |
gtatagttgaaaaacaaaggtcagttatatcttgaattt |
36807143 |
T |
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