View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_24 (Length: 369)
Name: NF5039_low_24
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 43119758 - 43119544
Alignment:
| Q |
7 |
agagagaggatgtctccataatcatcattttctataagtaccaaaatatattttattttttggtacaagtaccaaaatattttactccataataaaaata |
106 |
Q |
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| T |
43119758 |
agagaggggatgtctctataatcatcattttctataagtaccaaatttttttttttttttttgtacaagtaccaaaatattttactccgtaataaaaata |
43119659 |
T |
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| Q |
107 |
cttatttagtttggttctaaataggtaaaacatcctttagtgtggatgttttaagagaatcacaatacaaggagagtggaaatcactacaaagaacatga |
206 |
Q |
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| T |
43119658 |
cttatttagtttggtgctaaataggtaaaacatcctttagtatggatgttttaagagaatcacaatacaaggagagtggaaatcactacagagaacatga |
43119559 |
T |
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| Q |
207 |
gagatagaagtctatgt |
223 |
Q |
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||| |||||||||||| |
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| T |
43119558 |
gag--agaagtctatgt |
43119544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 43119543 - 43119446
Alignment:
| Q |
257 |
gtcgcccagtgaaaacaatttgatagttgttgtacctagaaaaaatagatttatgactatgagtcatattccaataggctgaattttacatattgaat |
354 |
Q |
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| T |
43119543 |
gtcgcccagtgaaaacaacttgaaagttgttgtacctagaaaaaatagatttatgactatgagtcatattccaatagattgaattttacatattgaat |
43119446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 354
Target Start/End: Original strand, 6783700 - 6783919
Alignment:
| Q |
135 |
aacatcctttagtgtggatgttttaagagaatcacaatacaa------ggagagtggaaatcactacaaagaacatgagagatagaagtctatgtcaaag |
228 |
Q |
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| T |
6783700 |
aacatcctctattgtggatgttttaagagattcagaatacaatcaagaggagactggaaatcactatgaagaacataagagatagaagtttgtgccaaaa |
6783799 |
T |
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| Q |
229 |
tatgagctacgaatggtattgaaagttggtcgcccagtgaaaacaatttgatagttgttgtacctagaaaa-aatagatttatgactatgagtcatattc |
327 |
Q |
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| T |
6783800 |
catgagctcc--atc--att---agtttttcgcctggtgaaaacaacttgaaagttgttgtacctagaaaaaaatagatttacaaccatgggtcatattc |
6783892 |
T |
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| Q |
328 |
caataggctgaattttacatattgaat |
354 |
Q |
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|||||| |||||||||||| |||||| |
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| T |
6783893 |
caatagattgaattttacatgttgaat |
6783919 |
T |
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