View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_25 (Length: 369)
Name: NF5039_low_25
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_25 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 1730 - 1391
Alignment:
| Q |
21 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1730 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
1631 |
T |
|
| Q |
121 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
220 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1630 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
1531 |
T |
|
| Q |
221 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacataatcacccgaatcaatattactgcttctattacagccctcttctcgaacatctcag |
320 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
1431 |
T |
|
| Q |
321 |
caacctgttgccattcaaaatttacaacataattttccta |
360 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
1430 |
caacctgttgccattcaaaatttacgacataattttccta |
1391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 4091 - 4409
Alignment:
| Q |
17 |
gcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| |
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| T |
4091 |
gcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtga |
4190 |
T |
|
| Q |
117 |
tgaatttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatag |
216 |
Q |
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||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
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| T |
4191 |
ggaacctaagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagag |
4290 |
T |
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| Q |
217 |
caaaccacaaatcaacaaagtgcccaatcttgttgctagaagccacataatcacccgaatcaatattactgcttctattacagccctcttctcgaacatc |
316 |
Q |
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||||||||||||||| ||||||||||| || ||||| |||||||| | |||||||| |||||||||||||||||| ||||| | |||||| | | |||| |
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| T |
4291 |
caaaccacaaatcaataaagtgcccaacctcgttgccagaagccatagaatcacccttatcaatattactgcttctgttacaccgctcttcactagcatc |
4390 |
T |
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| Q |
317 |
tcagcaacctgttgccatt |
335 |
Q |
| |
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|||||||||||||| |||| |
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| T |
4391 |
tcagcaacctgttggcatt |
4409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 31331816 - 31331477
Alignment:
| Q |
21 |
tttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtgatgaa |
120 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31331816 |
tttgtagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcataggattttgatgtaaacgaatgcgagtctaaaaggagtgaggaa |
31331717 |
T |
|
| Q |
121 |
tttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatagcaaa |
220 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31331716 |
tttatgcttgagacccctttgtacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttactgagacatagcaaa |
31331617 |
T |
|
| Q |
221 |
ccacaaatcaacaaagtgcccaatcttgttgctagaagccacataatcacccgaatcaatattactgcttctattacagccctcttctcgaacatctcag |
320 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31331616 |
ccacaaatcaacaaagtgcccaaccttgttgctagaagccacagaatcaccctaatcaatattactgcttctattacagccctcttctcgaacatctcag |
31331517 |
T |
|
| Q |
321 |
caacctgttgccattcaaaatttacaacataattttccta |
360 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
31331516 |
caacctgttgccattcaaaatttacgacataattttccta |
31331477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 31319579 - 31319261
Alignment:
| Q |
17 |
gcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagaggcatatgattttgatgtaaacgaatgcgagtctaaaaggagtga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||||||| |
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| T |
31319579 |
gcactttgcagcaaggttgaagaaataatatatacccaagagaagaaaacaaagagacataggactttgatgtaagcgaatgcgagtctaaaaggagtga |
31319480 |
T |
|
| Q |
117 |
tgaatttatgcttgagacccctttgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttattgagacatag |
216 |
Q |
| |
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||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
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| T |
31319479 |
ggaacctaagcttgagagccctctgcacaatcttttctcttttatccaaagacaagcttgagaagttgttgataaatggccatttcttgctaagacagag |
31319380 |
T |
|
| Q |
217 |
caaaccacaaatcaacaaagtgcccaatcttgttgctagaagccacataatcacccgaatcaatattactgcttctattacagccctcttctcgaacatc |
316 |
Q |
| |
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||||||||||||||| ||||||||||| || ||||| |||||||| | |||||||| |||||||||||||||||| ||||| | |||||| | | |||| |
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| T |
31319379 |
caaaccacaaatcaataaagtgcccaacctcgttgccagaagccatagaatcacccttatcaatattactgcttctgttacaccgctcttcactagcatc |
31319280 |
T |
|
| Q |
317 |
tcagcaacctgttgccatt |
335 |
Q |
| |
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|||||||||||||| |||| |
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| T |
31319279 |
tcagcaacctgttggcatt |
31319261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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