View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_26 (Length: 367)
Name: NF5039_low_26
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 25247470 - 25247664
Alignment:
| Q |
1 |
gaagaataactgatgttttgtgttctataatcgaaagacagtatactatgttaagcttatgttctatgttttgtagtttttaagaagaagaaaatttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25247470 |
gaagaataactgatgttttgtgttctataatcgaaagacagtatactatgttaagcttatgttctatgttttgtagtttttaagaagaagaaaatttaaa |
25247569 |
T |
|
| Q |
101 |
gttataatgcttcagtagtgggtgaggcggtgtgactgtccttcgcgttgttgttagaaaataaggaggtgcagtatgatggtacaaataacaat |
195 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25247570 |
gttataatgcttcagtagggggtgaggtggtgtgactgtccttcacgttgttgttagaaaataaggaggtgcagtatgatggtacaaataacaat |
25247664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 25247705 - 25247786
Alignment:
| Q |
232 |
cagttttcaacctacagctgtcctcggtaaagagatttttccatggtggaaaagaagttttcttttcgaagttaaacagcacc |
314 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| ||| ||||||||| |||||| ||| |||| | | ||||||| ||||| |
|
|
| T |
25247705 |
cagttttcaacctacaggtgtcct-ggtaaagagactttcccatggtggcaaagaaatttcctttcccaggttaaacggcacc |
25247786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 38490546 - 38490349
Alignment:
| Q |
1 |
gaagaataactgatgttttgtgttctataatcgaaagacagtatactatgttaagcttatgttctatgttttgtagtttttaagaagaagaa---aattt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
38490546 |
gaagaataactgatgttttgtgttctataatcgaaagacggtatactatgttaagcttatgttctatgttttgtagcgtttaagaagaagaataaaattt |
38490447 |
T |
|
| Q |
98 |
aaagttataatgcttcagtagtgggtgaggcggtgtgactgtccttcgcgttgttgttagaaaataaggaggtgcagtatgatggtacaaataacaat |
195 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38490446 |
aaagttatgatgcttcagcagtgggtgaggtggtgtgactgtccttcgcgttgttgttagaaaataaggaggtgcagtgtgatggtacaaataacaat |
38490349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 38490307 - 38490250
Alignment:
| Q |
232 |
cagttttcaacctacagctgtcctcggtaaagagatttttccatggtggaaaagaagt |
289 |
Q |
| |
|
||||||||||||||||||||| || ||||||| || ||||||||| |||||||||||| |
|
|
| T |
38490307 |
cagttttcaacctacagctgttctgggtaaagggacttttccatgatggaaaagaagt |
38490250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 37823501 - 37823447
Alignment:
| Q |
141 |
cttcgcgttgttgttagaaaataaggaggtgcagtatgatggtacaaataacaat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||| |||||| |
|
|
| T |
37823501 |
cttcgcgttgttgttagaaaataaggaggtgcagtaaaatgttacaaacaacaat |
37823447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 33432914 - 33433014
Alignment:
| Q |
67 |
tgttttgtagtttttaagaagaagaaaatttaaagttataatgcttcagtagtgggtgaggcggtgtgactgtccttcgcgttgttgttagaaaataagg |
166 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||| |||||||| ||||||||||||| ||| |||| |||||||||| |||||||||| |
|
|
| T |
33432914 |
tgttttgtagtgattaaaaagaagaaaatttaacgttttaatgcttaagtagtgggtgag---------atgtgcttcacgttgttgttggaaaataagg |
33433004 |
T |
|
| Q |
167 |
aggtgcagta |
176 |
Q |
| |
|
|||||||||| |
|
|
| T |
33433005 |
aggtgcagta |
33433014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 316
Target Start/End: Original strand, 24741784 - 24741855
Alignment:
| Q |
245 |
acagctgtcctcggtaaagagatttttccatggtggaaaagaagttttcttttcgaagttaaacagcaccga |
316 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||| ||| |||| |||||| | || |||||| ||||||| |
|
|
| T |
24741784 |
acaggtgtccttggtaaagaggtttttccatggtgggaaaaaagtcttctttcccaaattaaacggcaccga |
24741855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 25664988 - 25665023
Alignment:
| Q |
315 |
gatactaacaccttatgacatggattagtttaagttt |
351 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25664988 |
gatactaacacct-atgacatggattagtttaagttt |
25665023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University