View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_28 (Length: 325)
Name: NF5039_low_28
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 30049138 - 30048842
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049138 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
30049039 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049038 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
30048939 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048938 |
gaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
30048842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 7161479 - 7161199
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
7161479 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaaccgatccagcccaat----------------ttcaatcttac |
7161396 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161395 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
7161296 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161295 |
gaaccttgaaagcaaactagtagagaacatcaaatctagtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
7161199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 92
Target Start/End: Complemental strand, 18014651 - 18014622
Alignment:
| Q |
63 |
tcatcaatagatccagcccaatcactatca |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18014651 |
tcatcaatagatccagcccaatcactatca |
18014622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 196877 - 197173
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196877 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
196976 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196977 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
197076 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
197077 |
gaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
197173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 3945392 - 3945096
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945392 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
3945293 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945292 |
tatcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
3945193 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945192 |
gaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
3945096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 39950038 - 39950334
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950038 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccagcccaatcactatcaacaaagccttcaatcttac |
39950137 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39950138 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
39950237 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39950238 |
gaacctagaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaagacaacctatcaaactcctatattgagtaacatct |
39950334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 22365020 - 22364724
Alignment:
| Q |
12 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatcaacaaagccttcaatcttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365020 |
gaaaatacaccactaccaagtgaaaaaacataaccacttgtgcttttagaatcatcaacagatccagcccaatcactatcaacaaagccttcaatcttac |
22364921 |
T |
|
| Q |
112 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364920 |
catcacctttgttgtaccaaataccaaaatcagtagtacctcttatgtacctcaacactcttttgcccacacctaagtgtgttacacttggtgaatgcat |
22364821 |
T |
|
| Q |
212 |
gaacctagaaagcaaactagcagagaacaccaaatctggtccagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
308 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22364820 |
gaaccttgaaagcaaactagcagagaacatcaaatctggtctagttgcagtcaagtaaagaagacaaccaatcaaactcctatattgagtaacatct |
22364724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 22135006 - 22134942
Alignment:
| Q |
27 |
ccaagtgaaaaaacataaccacttgtgcttttagaatcatcaatagatccagcccaatcactatc |
91 |
Q |
| |
|
|||| |||||||||||||||| ||||| || |||||||||| | |||||||||||||||||| |
|
|
| T |
22135006 |
ccaaatgaaaaaacataaccagaagtgctcttggaatcatcaacacttccagcccaatcactatc |
22134942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University