View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_3 (Length: 721)
Name: NF5039_low_3
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 360 - 707
Target Start/End: Complemental strand, 32833586 - 32833239
Alignment:
| Q |
360 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833586 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttaaatgcttaattgcatcttactttatgctgataaacttataa |
32833487 |
T |
|
| Q |
460 |
atgagtgggggaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatg |
559 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833486 |
atgagtggggtaaaatattaattcagcataatatatatactttactttatgtttgtaatgttcgcttgatgtaagtttccatttgatatattggattatg |
32833387 |
T |
|
| Q |
560 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833386 |
ttatgggatatgaacttgtgcttgaaattttagtgacggttattcttaaatttatgcatatctgtcaggataacaattttaaacattattaagtagtggc |
32833287 |
T |
|
| Q |
660 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833286 |
ttttatttaaagataattaaaaagtggcttttatgatgtatgatgatg |
32833239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 333
Target Start/End: Complemental strand, 32840340 - 32840031
Alignment:
| Q |
24 |
tggaggcaggtttctttgatccagaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcaaatggaggtttgtttttgggtgaggatgg |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32840340 |
tggaggcaggtttctttgatccggaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcagatggaggtttgtttttgggtgaggatgg |
32840241 |
T |
|
| Q |
124 |
aggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840240 |
aggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatt |
32840141 |
T |
|
| Q |
224 |
tgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttct |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32840140 |
tgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttct |
32840041 |
T |
|
| Q |
324 |
aactgttttc |
333 |
Q |
| |
|
|||||||||| |
|
|
| T |
32840040 |
aactgttttc |
32840031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 333
Target Start/End: Complemental strand, 32833928 - 32833617
Alignment:
| Q |
22 |
agtggaggcaggtttctttgatccagaggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcaaatggaggtttgtttttgggtgaggat |
121 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32833928 |
agtggaggcaggtttctttgatccggtggcagattgttccggtgcagaagatgaatgtggttgttgcgaatcagatggaggtttgtttttgggtgaggat |
32833829 |
T |
|
| Q |
122 |
ggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833828 |
ggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattga |
32833729 |
T |
|
| Q |
222 |
tttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgactt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32833728 |
tttgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgactt |
32833629 |
T |
|
| Q |
322 |
ctaactgttttc |
333 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32833628 |
ctaactgttttc |
32833617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 78 - 315
Target Start/End: Complemental strand, 29605472 - 29605235
Alignment:
| Q |
78 |
gtggttgttgcgaatcaaatggaggtttgtttttgggtgaggatggaggatcttgagagttctttggtgattgagtcatgttgagaggtttctttctttc |
177 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||| ||||||| ||||||||| ||||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
29605472 |
gtggttgttgtgaatcagatggaggttgatttttgggattggatggaagatcttgaggtttctttggttaatcagtcatgttgagaggtttctttctttc |
29605373 |
T |
|
| Q |
178 |
tgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29605372 |
tgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgtgatactgatcattattatatagtgagtgacgtttcagtgtatgcttgtttg |
29605273 |
T |
|
| Q |
278 |
aattggaagcttgcttcacaagtaactctaactgtaac |
315 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
29605272 |
aattggaaacttgcttcacaagtaactctaaccgtaac |
29605235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 360 - 489
Target Start/End: Complemental strand, 32840008 - 32839879
Alignment:
| Q |
360 |
cttttggttgacactatactaactcacccttaatcaagcttgttaatctaattatcttcaatgcttaattgcatcttactttatgctgataaacttataa |
459 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32840008 |
cttttggttgacactatactaactcacacttaatcaagcttgttaatctaattctcttcaatgtttaattgcatcttactttatgctggtaaacttataa |
32839909 |
T |
|
| Q |
460 |
atgagtgggggaaaatattaattcagcata |
489 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
32839908 |
atgagtggggaaaaatattaattcagcata |
32839879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 496 - 561
Target Start/End: Complemental strand, 32839845 - 32839780
Alignment:
| Q |
496 |
atactttactttatgtttgtaatgttcacttgatgtaagtttccatttgatatattggattatgtt |
561 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
32839845 |
atactttacattatgtttgtaatgttcacttgatttaagtttccatttcatttattggattatgtt |
32839780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 29605080 - 29605042
Alignment:
| Q |
423 |
cttaattgcatcttactttatgctgataaacttataaat |
461 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
29605080 |
cttaattgcatcttactttgtgctgataaacatataaat |
29605042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 308
Target Start/End: Original strand, 19946835 - 19947009
Alignment:
| Q |
127 |
atcttgagagttctttggtgattgagtcatgttgagaggtttctttctttctgagaaaagagaatatggaaaatgtgaaatgttattatgattgatttgt |
226 |
Q |
| |
|
|||||| | |||||||| ||| | |||||||||||||| ||| ||||||||| | || |||| |||| |||||||||||||||||| ||||| ||||| |
|
|
| T |
19946835 |
atcttgggtgttctttgctgaatcagtcatgttgagagtttt-tttctttctcacaagagag--tatgaaaaatgtgaaatgttattgtgattattttgt |
19946931 |
T |
|
| Q |
227 |
gatactgatcattattatatagtgagtgacttttcagtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaa |
308 |
Q |
| |
|
||||| || |||||||||| | |||| |||| |||||||||||||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
19946932 |
gatacacattgttattatatact-agtg-cttt--agtgtatgcttgttggaactagaagcttgcttcacaagtaactctaa |
19947009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 19947235 - 19947296
Alignment:
| Q |
262 |
agtgtatgcttgtttgaattggaagcttgcttcacaagtaactctaactgtaactgacttct |
323 |
Q |
| |
|
||||||||||| || ||| | ||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19947235 |
agtgtatgctttttggaactagaaacttgcttcacaagtaactctaactgtaacagacttct |
19947296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 462
Target Start/End: Original strand, 19961148 - 19961187
Alignment:
| Q |
423 |
cttaattgcatcttactttatgctgataaacttataaatg |
462 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
19961148 |
cttaactgcatcttactttgtgctgataaacttataaatg |
19961187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 28405748 - 28405835
Alignment:
| Q |
127 |
atcttgagagttctttggtgattgagtcatgttgagaggtttct-ttctttctgagaaaagagaatatggaaaatgtgaaatgttatt |
213 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| |||||||||| |||||||| | |||| || ||| |||||||||| ||||||| |
|
|
| T |
28405748 |
atcttgatcgttctttggtgattgagccatgttaagaggtttctcttctttctcacaaaattgagtatacaaaatgtgaagtgttatt |
28405835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 28405871 - 28405906
Alignment:
| Q |
281 |
tggaagcttgcttcacaagtaactctaactgtaact |
316 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28405871 |
tggaaacttgcttcacaagtaactctaactgtaact |
28405906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University