View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_32 (Length: 314)
Name: NF5039_low_32
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 298
Target Start/End: Original strand, 35192860 - 35193135
Alignment:
| Q |
23 |
aacagattcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttcttgacggcgtctgatattctcggtacct |
122 |
Q |
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| T |
35192860 |
aacagattcaccatcgatctctttgcggtggaagttctggtgacagttacaagcggcgcaaataacagcttcttgacggcgtatgatattctcggtacct |
35192959 |
T |
|
| Q |
123 |
caccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagttagcaagtgagtcttaactt |
222 |
Q |
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||||||||||||||||| | |||| |||||||||| | || ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
35192960 |
caccgttgaaacaaaaccgttgttgccgttaccttttcatccgtcaacttcgacggtaagttttgaacgtgaagccgagttagcaagtgagtcataactt |
35193059 |
T |
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| Q |
223 |
gttggcactggtgtttgtgtttctggaatctccatatcctcttcttgtccatcaaattccatctcactcttcaaac |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35193060 |
gttggcactggtgtttgtgtttctggaatctccatatcctcttcttgttcatcaaattccatctcactcttcaaac |
35193135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 44747920 - 44748196
Alignment:
| Q |
22 |
taacagattcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttcttgacggcgtctgatattctcggtacc |
121 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44747920 |
taacagattcaccatcgatctctttgcagtggaagttctggtgacagttacaagcggcgcaaataacagcttcttgatggcgtctgatattctcggtacc |
44748019 |
T |
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| Q |
122 |
tcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagttagcaagtgagtcttaact |
221 |
Q |
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| T |
44748020 |
tcatcgttgaaacaaaaccgtcgttgccattacctttccttccgtcaactccgacggtgagttttgaacgtgaagccgagttagcaagtgagtcataact |
44748119 |
T |
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| Q |
222 |
tgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgtccatcaaattccatctcactcttcaaac |
298 |
Q |
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||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
44748120 |
tgttggcactggtgtttatgtttctagaatctccatatcatcttcttgttcatcaaattccatctcactcttcaaac |
44748196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 26146006 - 26145840
Alignment:
| Q |
104 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
203 |
Q |
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| T |
26146006 |
tctgacattctaggtacctcatcgtcgaaacaaaaccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaacgtgaagctgaatt |
26145907 |
T |
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| Q |
204 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
270 |
Q |
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| T |
26145906 |
accaagtcaatcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
26145840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 27508118 - 27507955
Alignment:
| Q |
104 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
203 |
Q |
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||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||| |
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| T |
27508118 |
tctgacattctcggtacctcaccg---aagcaaaaccgccgttgccgttacctttccttccgtcaactccaacggtgagttttgaacgtgaagctgagtt |
27508022 |
T |
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| Q |
204 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
270 |
Q |
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| T |
27508021 |
actaagtgagtcataactcgttggcactggtgtttgtatttctggaatctccatctcctcttcttgt |
27507955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 27508264 - 27508199
Alignment:
| Q |
29 |
ttcaccatcgatctctttgcggtggaagttttggtgacagttacaagcggcgcaaataacagcttc |
94 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27508264 |
ttcaccatcgatctctttgcggtggaagttccggtgacagttacaagcggcgcaaataacagcttc |
27508199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 137486 - 137320
Alignment:
| Q |
104 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
203 |
Q |
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||||| ||||||||||||||| ||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||| || || |
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| T |
137486 |
tctgacattctcggtacctcatcgtcgaaacaaaaccgccgttgccattacctttccttctgtcaactacgacggtgagttttgaacttgaagttgaatt |
137387 |
T |
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| Q |
204 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
270 |
Q |
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| T |
137386 |
accaagtcagtcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
137320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 30232319 - 30232153
Alignment:
| Q |
104 |
tctgatattctcggtacctcaccgttgaaacaaaactgccgttgtcgttacctttccttctgtcaactccgacggtgagttttgaaggtgaagccgagtt |
203 |
Q |
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||||| ||||||||||||||| ||| ||||||||| ||||||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||| || || |
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| T |
30232319 |
tctgacattctcggtacctcatcgtcaaaacaaaaccgccgttgccattacctttccttccgtcaactacgacggtgagttttgaatgtgaagctgaatt |
30232220 |
T |
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| Q |
204 |
agcaagtgagtcttaacttgttggcactggtgtttgtgtttctggaatctccatatcctcttcttgt |
270 |
Q |
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| T |
30232219 |
accaagtcagtcataactcgttggcactggtgtttgtgtttttggaatctccatctcctcttcttgt |
30232153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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