View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_37 (Length: 304)

Name: NF5039_low_37
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_37
NF5039_low_37
[»] chr5 (3 HSPs)
chr5 (156-254)||(14222661-14222759)
chr5 (162-237)||(14232509-14232584)
chr5 (74-121)||(14222397-14222444)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 14222661 - 14222759
Alignment:
Q  156 gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctagaaactccctcacactcttacaa 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14222661 gaacctagtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctaggaactccctcacactcttacaa 14222759  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 14232509 - 14232584
Alignment:
Q  162 agtgacagagataaaggaagggaacaaggtctgatgagaagtaacggatcttttggtttcacctttgctagaaact 237  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||    
T  14232509 agtgacagagataaagcaaggaaacaaggtctgatgacaagtaacggatcttttggtttcacctctgctaggaact 14232584  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 14222397 - 14222444
Alignment:
Q  74 aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14222397 aatacaacaataaaagagattcctaagaaaattactgcagaatcaatt 14222444  T

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