View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_40 (Length: 299)
Name: NF5039_low_40
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 98 - 283
Target Start/End: Complemental strand, 408801 - 408616
Alignment:
| Q |
98 |
tttgaaactatccctaaagtttcaactcttcaaaaagttacaaagagtttgggaaaatttacgtctattacataaaaagttataaagtatcattaagaag |
197 |
Q |
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| T |
408801 |
tttgaaactatccctaaagtttcaactcttcaaaaagttacaaagagtttgagaaaatttacgtctattacataaaaagttataaagtatcattaagaag |
408702 |
T |
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| Q |
198 |
ttacaagatgaaggcaagtgtgacactggttttcatccaaatttcccaaaatttgctggccctcttaatctgatcacacatctgtg |
283 |
Q |
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| T |
408701 |
ttacaagatgaaggcaagtgtgacactggttttcatccaaatttcccaaaatttgctggccctcttaatctgatcacacatctgtg |
408616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 412951 - 412871
Alignment:
| Q |
18 |
gtaaagaaaacagataaaaagct--agatagatacagaacattatagaacaagggtttgtatacaaacatcttaaatttag |
96 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
412951 |
gtaaagaaaacagataaaaagctttagatagatacagaacattatagaacaagggtttgtatacaaacatcttaaatttag |
412871 |
T |
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