View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_42 (Length: 289)
Name: NF5039_low_42
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_42 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 40059766 - 40059490
Alignment:
| Q |
13 |
aatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059766 |
aatatcacacataaattaccaaccaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagcca |
40059667 |
T |
|
| Q |
113 |
ctgccttcacaaatttcactaaatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40059666 |
ctgccttcacaaatttcactaaatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacag |
40059567 |
T |
|
| Q |
213 |
tagatcaacaccatgtttggataaactactttattaagcacttacagcatctacgttcttacgtatatgatatttct |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
40059566 |
tagatcaacaccatgtttggataaactactttattaagcacttacaacatataagttcttacgtatatgatatttct |
40059490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 34 - 209
Target Start/End: Complemental strand, 40077827 - 40077652
Alignment:
| Q |
34 |
accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
40077827 |
accaaactttacccgtagttccattcagcacacacatatggaccgatccggagatgcacatatagtcctgcctcagccactgcctttacaaatttcacta |
40077728 |
T |
|
| Q |
134 |
aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaacctta |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40077727 |
aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattataatagtctttctaacctta |
40077652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 250
Target Start/End: Complemental strand, 40085632 - 40085416
Alignment:
| Q |
34 |
accaaactttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaatttcacta |
133 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| || |||||||| ||||| |||||||||||||| | |
|
|
| T |
40085632 |
accaaactttacccatagttccattcagaacaaacatatggaccaatccggagatgcacatatagacctgcctcagctactgctttcacaaatttcacca |
40085533 |
T |
|
| Q |
134 |
aatccttcctctcatcaaaatcatactgcaaaaatccatttcatttcagtgaattataatagtctttctaaccttacagtagatcaacaccatgtttgga |
233 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| | |||| |||||||||| | ||| |||||| |
|
|
| T |
40085532 |
aatccttcctcccatcaaaatcatactgcaaaaatccatttcatttcaatgaattaagatagactttcttagcttatagtagatcaagatcatatttgga |
40085433 |
T |
|
| Q |
234 |
taaactactttattaag |
250 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
40085432 |
taaaatacttaattaag |
40085416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 22015825 - 22015910
Alignment:
| Q |
41 |
tttacccatagttccattcagcacaaacatatggaccgatgcggagatgcacatatagtcccgcctcagccactgccttcacaaat |
126 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| || || | || ||||||||||||||| |
|
|
| T |
22015825 |
tttacccgtaattccattcagcacacacatatggaccgatccggagatgcacatataaacctgctgctgctactgccttcacaaat |
22015910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University