View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_43 (Length: 288)
Name: NF5039_low_43
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_43 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 144620 - 144809
Alignment:
| Q |
11 |
aatgagaagaaagtttacaatttaaagaaggcactatatggactnnnnnnngcaccacgggcttggtatagtcgtataaagtcttatttcatcatagcgg |
110 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||| | || | |
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| T |
144620 |
aatgagaagaaagtttacaagttaaagaaggcgctatacggactaaaacaagcaccacgagcttggtatagtcgtatagagtcttatttcattagagatg |
144719 |
T |
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| Q |
111 |
gctttcatacatgtccatatgagcacacaagtttcattaagcttgcagatggtgagaaaatgcttgtagtatgcttatatgttgacgact |
200 |
Q |
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| T |
144720 |
gctttcataaatgtccatatgagcacacacttttcattaagcttgcagatggtgaaaaaatgcttgtagtatgcttatatgttgatgact |
144809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 152641 - 152830
Alignment:
| Q |
11 |
aatgagaagaaagtttacaatttaaagaaggcactatatggactnnnnnnngcaccacgggcttggtatagtcgtataaagtcttatttcatcatagcgg |
110 |
Q |
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| T |
152641 |
aatgagaagaaagtttacaagttaaagaaggcgctatacggactaaaacaagcaccacgagcttggtatagtcgtatagagtcttatttcattagagatg |
152740 |
T |
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| Q |
111 |
gctttcatacatgtccatatgagcacacaagtttcattaagcttgcagatggtgagaaaatgcttgtagtatgcttatatgttgacgact |
200 |
Q |
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| T |
152741 |
gctttcataaatgtccatatgagcacacacttttcattaagcttgcagatggtgaaaaaatgcttgtagtatgcttatatgttgatgact |
152830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 27924864 - 27925033
Alignment:
| Q |
11 |
aatgagaagaaagtttacaatttaaagaaggcactatatggactnnnnnnngcaccacgggcttggtatagtcgtataaagtcttatttcatcatagcgg |
110 |
Q |
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||||||||||| || ||||| ||||||||| |||||||| |||| |||||||| | |||||||||||| ||| ||||||||||||| | ||||| |
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| T |
27924864 |
aatgagaagaatgtctacaagttaaagaagacactatatagactaaaacaagcaccacgagtttggtatagtcgaatagagtcttatttcataagagcgg |
27924963 |
T |
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| Q |
111 |
gctttcatacatgtccatatgagcacacaagtttcattaagcttgcagatggtgagaaaatgcttgtagt |
180 |
Q |
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| T |
27924964 |
gcattcatatatgtccatatgagcacacaagtttcactaagcttgcagatggtgagaaaatgcttgtagt |
27925033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 28005904 - 28006013
Alignment:
| Q |
85 |
tataaagtcttatttcatcatagcgggctttcatacatgtccatatgagcacacaagtttcattaagcttgcagatggtgagaaaatgcttgtagtatgc |
184 |
Q |
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|||| ||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
28005904 |
tatagagtcttatttcatcagagtgggctttc------gtccatatgagcacacaattttcattaagcttgccgatggtgagaaaatgattgtagtatgc |
28005997 |
T |
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| Q |
185 |
ttatatgttgacgact |
200 |
Q |
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||||||||||| |||| |
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| T |
28005998 |
ttatatgttgatgact |
28006013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 144879 - 144948
Alignment:
| Q |
203 |
tgacagatttgggtctgatgtactattttcttgtccttgaagtagtacaatcaattgctggaatttttat |
272 |
Q |
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| T |
144879 |
tgacagatttgggtctgatgtactattttcttggccttgaggtagtacaatcaattgttggtatttttat |
144948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 152900 - 152969
Alignment:
| Q |
203 |
tgacagatttgggtctgatgtactattttcttgtccttgaagtagtacaatcaattgctggaatttttat |
272 |
Q |
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| T |
152900 |
tgacagatttgggtctgatgtactattttcttggccttgaggtagtacaatcaattgttggtatttttat |
152969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 24326804 - 24326993
Alignment:
| Q |
11 |
aatgagaagaaagtttacaatttaaagaaggcactatatggactnnnnnnngcaccacgggcttggtatagtcgtataaagtcttatttcatcatagcgg |
110 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||| ||||| |||||||| |||||||||||||||||| ||||||||||||| | ||| | |
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| T |
24326804 |
aatgagaagaaagtttacaagttaaagaaggcgttatacggactaaaacaagcaccacgagcttggtatagtcgtatagagtcttatttcattagagctg |
24326903 |
T |
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| Q |
111 |
gctttcatacatgtccatatgagcacacaagtttcattaagcttgcagatggtgagaaaatgcttgtagtatgcttatatgttgacgact |
200 |
Q |
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| T |
24326904 |
gctttcaaaaatgtccatatgagcacacacttttcattaagcttgcagatggtgagaaaatgcttgtagtatgcttatatgttgatgact |
24326993 |
T |
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