View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_44 (Length: 286)
Name: NF5039_low_44
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 26309730 - 26309470
Alignment:
| Q |
13 |
gagaaccaatgaggtaactacatttaatgacttgaaggttgaagattgttaattcttaaatttgtcaagaggaagaaatggtagtagaggaa-ttgtaag |
111 |
Q |
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| T |
26309730 |
gagaaccaatgaggtaacgacatttaatgacttgaaggttgaagattgttaattcttaaatgtgtcaagaggaagaaatggtagtaaaggaaattgtaag |
26309631 |
T |
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| Q |
112 |
ggtaagaaatcttggtttaaatccaattccaaaggatttgataaatcaaaatacaaatgcttcatttgtcaaaatatcggtcacatcaagaaggattttc |
211 |
Q |
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| T |
26309630 |
ggtaagaaatcttggtttaaatccatttccaaaggatttgataaatcaaaatacaaatgcttcatttgtcataatatcggtcacatcaagaaggattttc |
26309531 |
T |
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| Q |
212 |
ctgacaaggaaaaaatggtagttcttccattaacgttatggttgcctcagatgaagaaggt |
272 |
Q |
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| T |
26309530 |
cagacaaggaaaaaatggtagttattccattaacgttatggttgcctcagatgatgaaggt |
26309470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 32428957 - 32428923
Alignment:
| Q |
148 |
tttgataaatcaaaatacaaatgcttcatttgtca |
182 |
Q |
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| T |
32428957 |
tttgatatatcaaaatacaaatgcttcatttgtca |
32428923 |
T |
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