View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_47 (Length: 276)
Name: NF5039_low_47
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 3249183 - 3248999
Alignment:
| Q |
16 |
aacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249183 |
aacaaccaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaat |
3249084 |
T |
|
| Q |
116 |
gaactacatgacacagagaaattgcatgaggaagaaaatgaggatgatgttgtgatttctaatcctctttttgggatgaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3249083 |
gaactacatgacacagagaaattgcatgaggaagaagatgaggatgatgttgtgatttctaatcctctttttgggatgaactcaa |
3248999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 36905451 - 36905596
Alignment:
| Q |
20 |
accaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaac |
119 |
Q |
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||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||| | |
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| T |
36905451 |
accaatactgaaaatgcacaatctaaacaggctgctactgaactacacaacataaccaattcctctgattctcatttacgtcttggaagcttgaatgacc |
36905550 |
T |
|
| Q |
120 |
tacatgacacagagaaattgcatgaggaagaaaatgaggatgatgt |
165 |
Q |
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||||| |||||| || ||||||||||||| ||||||||||||||| |
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| T |
36905551 |
tacataacacaggtaacttgcatgaggaaggaaatgaggatgatgt |
36905596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 36905621 - 36905722
Alignment:
| Q |
166 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
265 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
36905621 |
tgtgatttcaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttaacaggttgcaggaagatagtgcaattcat |
36905720 |
T |
|
| Q |
266 |
ct |
267 |
Q |
| |
|
|| |
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|
| T |
36905721 |
ct |
36905722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 3248998 - 3248952
Alignment:
| Q |
222 |
tacataatccttttgacaggttgcaggaagatagtacaattcatctc |
268 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3248998 |
tacataatacttttgacaggttgcaggaagatagtacaattcatctc |
3248952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 28102552 - 28102423
Alignment:
| Q |
20 |
accaatactaaaaatacacattctgaacaggctgctactgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaac |
119 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
28102552 |
accaataatgaaaatacacaatctgaacaggctgctactgaactacacaacataaccaactcccctgattctcatttacgacttggaagcttgaatgacc |
28102453 |
T |
|
| Q |
120 |
tacatgacacagagaaattgcatgaggaag |
149 |
Q |
| |
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|||||||||| ||| | ||||||||||||| |
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| T |
28102452 |
tacatgacaccgagtacttgcatgaggaag |
28102423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 267
Target Start/End: Complemental strand, 28102382 - 28102281
Alignment:
| Q |
166 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
265 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
28102382 |
tgtgattttaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttgatgggttgcaggaagatagtgcaattcat |
28102283 |
T |
|
| Q |
266 |
ct |
267 |
Q |
| |
|
|| |
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|
| T |
28102282 |
ct |
28102281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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