View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_50 (Length: 265)
Name: NF5039_low_50
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 246
Target Start/End: Complemental strand, 230408 - 230196
Alignment:
| Q |
34 |
aagatgggcacacatcatatagttttggtggtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaact |
133 |
Q |
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| T |
230408 |
aagatgggcacacatcatatagttttggttgtaattggtttgatctgcgttgtgttttccagcgtaggagcccaacaagctccatccacctccccaaact |
230309 |
T |
|
| Q |
134 |
catctccagcaccacccactcctccttctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccacccgtccagtcttc |
233 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230308 |
catctccagcaccacccactcctcctgctaatacacccccaaccactcctcaagcctcccctccacctgttcaatcttctcctccacccgtccagtcttc |
230209 |
T |
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| Q |
234 |
tccacctcctctt |
246 |
Q |
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||||||||||||| |
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| T |
230208 |
tccacctcctctt |
230196 |
T |
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