View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_52 (Length: 262)

Name: NF5039_low_52
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_52
NF5039_low_52
[»] chr1 (2 HSPs)
chr1 (18-251)||(51119367-51119604)
chr1 (49-139)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (28-199)||(1663250-1663429)
chr3 (73-151)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (28-155)||(28964790-28964917)
chr4 (28-140)||(7043335-7043448)
chr4 (49-154)||(11494107-11494213)
chr4 (49-154)||(9881272-9881378)
chr4 (72-154)||(32347602-32347683)
chr4 (72-140)||(26905394-26905461)
chr4 (48-135)||(25170244-25170330)
chr4 (72-138)||(24520783-24520848)
[»] chr2 (3 HSPs)
chr2 (66-200)||(12635115-12635250)
chr2 (49-140)||(40498002-40498092)
chr2 (68-157)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (49-140)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (49-165)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (142-200)||(40905516-40905574)
chr5 (49-88)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (72-201)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (49-140)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 51119604 - 51119367
Alignment:
Q  18 atagagaatggagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagc 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119604 atagagaatgaagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagc 51119505  T
Q  118 acaagctatctaactaac----taacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaacactctcttcaacaa 213  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  51119504 acaagctatctaactaactaactaacacgttttgtaacaaaattctaactaacttgttacatgggagttatgaattaaatcttaacactctcttcaacaa 51119405  T
Q  214 cacttcttcatgtctttctgttttgtttttcatctcat 251  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51119404 cacttcttcatgtctttctgttttgtttttcatctcat 51119367  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 25590744 - 25590835
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaac 139  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| |||||  |||||||| |||||| || || |||||| ||||||||||    
T  25590744 aatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaactaac 25590835  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 1663429 - 1663250
Alignment:
Q  28 gagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 127  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  1663429 gagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatc 1663330  T
Q  128 taac--------taactaacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaac 199  Q
    ||||        ||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1663329 taactaacaaactaactaagaagttttgtaacaaaattctaactaacttgctacatggcagttatggattaaatcttaac 1663250  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 51810630 - 51810551
Alignment:
Q  73 acattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaac 151  Q
    |||||||||||||||| |||| |||||  ||||| || ||||||||||||||||||| ||| | ||||  ||||||||||    
T  51810630 acattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaac 51810551  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 28964790 - 28964917
Alignment:
Q  28 gagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 127  Q
    |||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  28964790 gagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatc 28964889  T
Q  128 taactaactaacacgttttgtaacaaaa 155  Q
    |||||||| ||||  |||||||| ||||    
T  28964890 taactaacaaacaaattttgtaagaaaa 28964917  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 7043335 - 7043448
Alignment:
Q  28 gagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatata--acacttacttgtagcacaagcta 125  Q
    |||||||| ||||||||  | ||||||||||||   | ||||||||||||||| ||||||||||| | | |||||  |||||| ||||||||||||||||    
T  7043335 gagagtttgcttgtaata-tgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgcttgtagcacaagcta 7043433  T
Q  126 tctaactaactaaca 140  Q
    |||||||||||||||    
T  7043434 tctaactaactaaca 7043448  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 11494213 - 11494107
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagcct-tttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 147  Q
    |||||||||||||| | ||||||||||||||||||||| | |||| |||||  ||| |||| |||||||||||| |||||| || |||||||  ||||||    
T  11494213 aatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttg 11494114  T
Q  148 taacaaa 154  Q
    |||||||    
T  11494113 taacaaa 11494107  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 9881378 - 9881272
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagcc-ttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 147  Q
    |||||||||||| | | |||||||||||||||||||| || |||| |||||  |||||||| ||||||| |||||||| ||   ||||||||  ||||||    
T  9881378 aatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaactagttttg 9881279  T
Q  148 taacaaa 154  Q
    |||||||    
T  9881278 taacaaa 9881272  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 32347602 - 32347683
Alignment:
Q  72 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaa 154  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaa 32347683  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 26905461 - 26905394
Alignment:
Q  72 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 140  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||| ||| |||||||||||||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaaca 26905394  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 25170330 - 25170244
Alignment:
Q  48 taatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac 135  Q
    |||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||| |||||||||||||    
T  25170330 taatctcattaagacttgaagtttcacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaatctatctaactaac 25170244  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 24520783 - 24520848
Alignment:
Q  72 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaa 138  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| ||||||| |||||||||||||    
T  24520783 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctgtctaactaactaa 24520848  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 200
Target Start/End: Complemental strand, 12635250 - 12635115
Alignment:
Q  66 aatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgt-aacaaaattctaacta 164  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||||| |    
T  12635250 aatgtacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaacca 12635151  T
Q  165 atttgttacatgggagttatggattaaatcttaaca 200  Q
    | ||| ||  ||| ||||||| ||||| ||||||||    
T  12635150 acttgctatgtggcagttatgtattaactcttaaca 12635115  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 40498092 - 40498002
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 140  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||| | ||| ||||| |  |||| |||||| ||||||| ||||||||    
T  40498092 aatctcattaagaattaaagttgcacaatacaaagccttttatatgcaca-atagcacttgccggtagaacaagcaatctaacaaactaaca 40498002  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 6962206 - 6962116
Alignment:
Q  68 tgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaatt 157  Q
    ||||||||||||||||||||| |||| |||||  |||||||| ||||||| ||||| |  ||  |||||||||  ||||||||||||||||    
T  6962206 tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatt 6962116  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 29010837 - 29010928
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 140  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||    
T  29010837 aatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaaca 29010928  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 26794267 - 26794384
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 147  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||||    
T  26794267 aatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttg 26794366  T
Q  148 taacaaaattctaactaa 165  Q
    |||||||||  |||||||    
T  26794367 taacaaaatcttaactaa 26794384  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 40905574 - 40905516
Alignment:
Q  142 gttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaaca 200  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  40905574 gttttgtaacaaaattctaactaacttgctacatggcagttatagattaaatcttaaca 40905516  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 14234195 - 14234156
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttt 88  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  14234195 aatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 8265942 - 8265811
Alignment:
Q  72 cacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaattctaactaatttg- 169  Q
    ||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||| |||||||||   |||||| |||     
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgc 8265843  T
Q  170 ttacatgggagttatggattaaatcttaacac 201  Q
    |||  ||| ||||||| ||||| |||||||||    
T  8265842 ttaggtggcagttatgaattaattcttaacac 8265811  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 140
Target Start/End: Original strand, 59489 - 59579
Alignment:
Q  49 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 140  Q
    ||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||  ||||| ||||||| ||||||||| |||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaaca 59579  T

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