View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_53 (Length: 262)
Name: NF5039_low_53
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 25510851 - 25510687
Alignment:
| Q |
5 |
attatccttttaattagtgtttgttgtaagaaaagttagtgttatgaactatttataaatatttttgagatgagtaagttagtttaatctgattaaatga |
104 |
Q |
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| T |
25510851 |
attatacttttaattagtgtttgttgtaagaaaagttagtgttatgaacgatttataaatatttttgagatgagtaagttagtttaatctgattaaatga |
25510752 |
T |
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| Q |
105 |
agagatgnnnnnnnnaaaaaatattgatcatgtagtttaatttgaagaatgagtttgtaaaattatg |
171 |
Q |
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| T |
25510751 |
agagatgtttttttt--aaaatattaatcatgtagtttaatttgaagaatgagtttgtaaaattatg |
25510687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 31985824 - 31985988
Alignment:
| Q |
5 |
attatccttttaattagtgtttgttgtaagaaaagttagtgttatgaactatttataaatatttttgagatgagtaagttagtttaatctgattaaatga |
104 |
Q |
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| T |
31985824 |
attatacttttaattagtgtttgttgtaagaaaagttagtgttatgaacgatttataaatatttttgagatgagtaagttagtttaatctgattaaatga |
31985923 |
T |
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| Q |
105 |
agagatgnnnnnnnnaaaaaatattgatcatgtagtttaatttgaagaatgagtttgtaaaattatg |
171 |
Q |
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| T |
31985924 |
agagatgtttttttt--aaaatattaatcatgtagtttaatttgaagaatgagtttgtaaaattatg |
31985988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 3752654 - 3752812
Alignment:
| Q |
11 |
cttttaattagtgtttgttgtaagaaaagttagtgttatgaactatttataaatatttttgagatgagtaagttagtttaatctgattaaatg-aagaga |
109 |
Q |
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| T |
3752654 |
cttttaattagtgtttgcagtaaaaaaaat-agtgttatgaatgatttttcaatatttttgagatgagttatttagtttaatatgattaaatgcaaaata |
3752752 |
T |
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| Q |
110 |
tgnnnnnnnnaaaaaatattgatcatgtagtttaatttgaagaatgagtttgtaaaattatgtgt |
174 |
Q |
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| T |
3752753 |
tatttttt-----aaatattaatcatgtggtttaatttgaagaatgagtttgtaaaattatgtgt |
3752812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 26492848 - 26492807
Alignment:
| Q |
62 |
aatatttttgagatgagtaagttagtttaatctgattaaatg |
103 |
Q |
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| T |
26492848 |
aatatttttgagatgagtcatttagtttaatctgattaaatg |
26492807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 26492782 - 26492736
Alignment:
| Q |
131 |
atcatgtagtttaatttgaagaatga---gtttgtaaaattatgtgt |
174 |
Q |
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| T |
26492782 |
atcatgtagtttaatttgaagaatgatctgtttgtaaaattatgtgt |
26492736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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