View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_54 (Length: 259)
Name: NF5039_low_54
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_54 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 32 - 241
Target Start/End: Complemental strand, 8906087 - 8905879
Alignment:
| Q |
32 |
ataaggctaaaaattcattaaagaaccaggagaaggcctgaaccaaatacaacaattcnnnnnnnggaaccaagcaaaaccaaaaaccagcaaactatgt |
131 |
Q |
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| T |
8906087 |
ataaggctaaaaattcattaaagaaccaggagaaggcctgaaccaaatacaacaattcaaaaaa-ggaaccaagcagaaccaaaaaccagcaaactatgt |
8905989 |
T |
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| Q |
132 |
cattctagaaatagacaatcctaatctatccctatcaagaagagacaaagtgaaattgggtggggaaggccaccattgagtagagtataaagctaatccc |
231 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8905988 |
cattctagaaatagacaatcctaatctatccctatccagaagagacaaaatgaaattgggtggggaaggccaccattgagtagagtataaagctaatccc |
8905889 |
T |
|
| Q |
232 |
tgaccattct |
241 |
Q |
| |
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|||||||||| |
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| T |
8905888 |
tgaccattct |
8905879 |
T |
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