View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_59 (Length: 250)
Name: NF5039_low_59
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_59 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37417251 - 37417019
Alignment:
| Q |
1 |
ttcatttttctgttaaatgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtact |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37417251 |
ttcatttttctgttaaataatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtact |
37417152 |
T |
|
| Q |
101 |
ttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37417151 |
ttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcttatatttttactatt |
37417052 |
T |
|
| Q |
201 |
ggaaaaactgtgatgacaatttctgttggaaat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
37417051 |
ggaaaaactgtgatgacaatttctgttggaaat |
37417019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 37424783 - 37424551
Alignment:
| Q |
1 |
ttcatttttctgttaaatgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtact |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37424783 |
ttcatttttctgttaaataatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtact |
37424684 |
T |
|
| Q |
101 |
ttgaaatatgagtggaaaatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactatt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37424683 |
ttgaaatatgagtgaaaaatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcatatatttttactatt |
37424584 |
T |
|
| Q |
201 |
ggaaaaactgtgatgacaatttctgttggaaat |
233 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
37424583 |
ggaaaaactgtgatgacaaattctgttggaaat |
37424551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 38358876 - 38358848
Alignment:
| Q |
30 |
agttctacaatttgaagggtattgtactt |
58 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38358876 |
agttctacaatttgaagggtattgtactt |
38358848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University