View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_60 (Length: 249)

Name: NF5039_low_60
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_60
NF5039_low_60
[»] chr7 (26 HSPs)
chr7 (75-230)||(8582628-8582783)
chr7 (75-230)||(8538769-8538924)
chr7 (75-230)||(8572555-8572710)
chr7 (76-230)||(8546641-8546795)
chr7 (87-223)||(8577266-8577402)
chr7 (75-178)||(8568803-8568906)
chr7 (76-199)||(8602700-8602823)
chr7 (78-208)||(7876838-7876968)
chr7 (78-199)||(8647669-8647790)
chr7 (76-199)||(8591364-8591487)
chr7 (99-199)||(13332163-13332263)
chr7 (78-205)||(8635506-8635633)
chr7 (85-205)||(29576996-29577116)
chr7 (110-199)||(3148371-3148460)
chr7 (188-230)||(8560773-8560815)
chr7 (98-196)||(8610652-8610750)
chr7 (108-190)||(8660242-8660324)
chr7 (78-199)||(8668433-8668554)
chr7 (99-208)||(10493005-10493114)
chr7 (108-205)||(17261390-17261487)
chr7 (99-199)||(27829358-27829458)
chr7 (108-199)||(6790408-6790499)
chr7 (87-146)||(8382296-8382355)
chr7 (108-190)||(1302309-1302391)
chr7 (76-205)||(29581172-29581301)
chr7 (150-202)||(17269140-17269192)
[»] chr8 (2 HSPs)
chr8 (75-226)||(12529833-12529984)
chr8 (113-199)||(43745827-43745910)
[»] chr2 (8 HSPs)
chr2 (107-205)||(12257921-12258019)
chr2 (101-215)||(12244400-12244514)
chr2 (98-205)||(16656607-16656714)
chr2 (111-208)||(12000334-12000431)
chr2 (99-205)||(12235787-12235893)
chr2 (107-199)||(16661079-16661171)
chr2 (123-199)||(43626333-43626409)
chr2 (99-230)||(7543266-7543397)
[»] chr4 (4 HSPs)
chr4 (107-208)||(35133451-35133552)
chr4 (78-199)||(9323077-9323198)
chr4 (78-199)||(9377556-9377677)
chr4 (78-199)||(9335049-9335169)
[»] chr5 (2 HSPs)
chr5 (123-199)||(42554200-42554276)
chr5 (113-199)||(28220950-28221036)
[»] chr1 (3 HSPs)
chr1 (108-198)||(4677554-4677644)
chr1 (98-198)||(34465262-34465362)
chr1 (108-199)||(15596057-15596148)
[»] chr6 (3 HSPs)
chr6 (123-179)||(11159653-11159709)
chr6 (123-190)||(11278609-11278676)
chr6 (123-179)||(11134316-11134372)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 8582628 - 8582783
Alignment:
Q  75 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8582628 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 8582727  T
Q  175 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8582728 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgc 8582783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 8538769 - 8538924
Alignment:
Q  75 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 174  Q
    ||||||||| ||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  8538769 gaattaccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtg 8538868  T
Q  175 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgc 230  Q
    | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  8538869 tggttttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgc 8538924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 8572555 - 8572710
Alignment:
Q  75 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 174  Q
    ||||||||| ||||||| |||| ||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |    
T  8572555 gaattaccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggag 8572654  T
Q  175 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgc 230  Q
    ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  8572655 ttgttctgtttccttggtcattgtgtatgatttcaacacgatcattttgctcctgc 8572710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 8546641 - 8546795
Alignment:
Q  76 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 175  Q
    |||||||| | | ||||||| |||||||||||| ||| |||||||||||||||||||||||||  ||||| ||||| || ||||||||||||||||||||    
T  8546641 aattaccaaatacagtgttgattgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgt 8546740  T
Q  176 tgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgc 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  8546741 tgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctcctgc 8546795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 8577266 - 8577402
Alignment:
Q  87 atagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttc 186  Q
    ||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||| ||||||    
T  8577266 atagtattggatggattagtagcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggttctgtttc 8577365  T
Q  187 cttgatcattgtgtatgatttccacacgatcgttttg 223  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  8577366 cttgatcattgtgtataatttctacacgatcgttttg 8577402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 8568803 - 8568906
Alignment:
Q  75 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 174  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  8568803 gaattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaagaaggtg 8568902  T
Q  175 ttgt 178  Q
    ||||    
T  8568903 ttgt 8568906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 8602700 - 8602823
Alignment:
Q  76 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 175  Q
    |||||||| |||||||||||  ||||||||||||||| |||||||||||||||||||| ||||| |||| |  || ||||||||||||| ||||||| ||    
T  8602700 aattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagt 8602799  T
Q  176 tgttttgtttccttgatcattgtg 199  Q
     ||| |||||||||||||||||||    
T  8602800 agttctgtttccttgatcattgtg 8602823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 208
Target Start/End: Complemental strand, 7876968 - 7876838
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||  ||| || ||||||||| ||||||||||||    
T  7876968 ttaccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttg 7876869  T
Q  178 ttttgtttccttgatcattgtgtatgatttc 208  Q
    || |||| ||||| |||||||| || |||||    
T  7876868 ttctgttgccttgttcattgtgaataatttc 7876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 8647669 - 8647790
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||| ||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||  ||  || ||||||||| |||||||||| |    
T  8647669 ttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtag 8647768  T
Q  178 ttttgtttccttgatcattgtg 199  Q
    || |||||||||||||||||||    
T  8647769 ttctgtttccttgatcattgtg 8647790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 8591364 - 8591487
Alignment:
Q  76 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 175  Q
    |||||||  ||| |||||| | ||||||||||||||| || ||||| ||||||||||||||||| ||||||  |||||||||||||||| ||||||||||    
T  8591364 aattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgt 8591463  T
Q  176 tgttttgtttccttgatcattgtg 199  Q
      || | |||||||||||||||||    
T  8591464 aattctatttccttgatcattgtg 8591487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 13332263 - 13332163
Alignment:
Q  99 gggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    |||||||  |||| |||||| |||||||||||||||||||||||||||  |||  | ||||||||| |||||||||| ||| | ||||||||||||||||    
T  13332263 gggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgt 13332164  T
Q  199 g 199  Q
    |    
T  13332163 g 13332163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 8635633 - 8635506
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||| ||| |||| ||||||||| | ||| || ||||||||||||||||||||||| ||||| |  | ||| ||||||||||||||||||||      
T  8635633 ttaccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtga 8635534  T
Q  178 ttttgtttccttgatcattgtgtatgat 205  Q
    || |||| ||||| |||||||| |||||    
T  8635533 ttctgttcccttgctcattgtggatgat 8635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 29577116 - 29576996
Alignment:
Q  85 agatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtt 184  Q
    ||||||||||||||||||| || ||||| |||||||| ||||||| |||||| || ||| | |||| ||| ||||| |||  ||||||||| ||| | ||    
T  29577116 agatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctatt 29577017  T
Q  185 tccttgatcattgtgtatgat 205  Q
     |||||||||||||| |||||    
T  29577016 gccttgatcattgtggatgat 29576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 3148371 - 3148460
Alignment:
Q  110 agcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||| || ||||||||||||| ||| ||||||  || ||| ||||||||| |||||||||| |||||||| ||||| ||||||||    
T  3148371 agcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtg 3148460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 8560773 - 8560815
Alignment:
Q  188 ttgatcattgtgtatgatttccacacgatcgttttgctcctgc 230  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  8560773 ttgatcattgtgtatgatttccacacgattgttttgctcctgc 8560815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 8610652 - 8610750
Alignment:
Q  98 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcatt 196  Q
    |||||| ||||||||||||||||| ||||||||||| ||||| ||||||  |  ||  ||||||||| ||||||| || ||| |||||||||| |||||    
T  8610652 tgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcatt 8610750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 8660242 - 8660324
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttg 190  Q
    ||||| ||||| || ||||||||||||||||| ||||||   | ||| ||||||||| | |||||||||||||||||||||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 8668433 - 8668554
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||||||||||    ||||||| ||||| |||||| || |||||||| |||||||| |||||   |||  | ||||||||| |||||||||||     
T  8668433 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgtta 8668532  T
Q  178 ttttgtttccttgatcattgtg 199  Q
    ||  ||||||||||||||||||    
T  8668533 ttcggtttccttgatcattgtg 8668554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 10493114 - 10493005
Alignment:
Q  99 gggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    |||||||  |||| |||||| || ||||||||||| ||||| ||||||  |||  | ||||||||| |||||||||| ||| | ||||||||||||||||    
T  10493114 gggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgt 10493015  T
Q  199 gtatgatttc 208  Q
    | || |||||    
T  10493014 gaataatttc 10493005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 17261390 - 17261487
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgat 205  Q
    ||||||||||| || || |||||||| ||||| |||| |   |||| |||||||||| ||||||| ||  |||||||||||||||||||||| |||||    
T  17261390 gcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgat 17261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 27829458 - 27829358
Alignment:
Q  99 gggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    ||||| ||||||||||| || || ||||||||||||||||| || ||    |  || ||||||||||||||||||||||| ||||| ||||| |||||||    
T  27829458 gggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgccttgttcattgt 27829359  T
Q  199 g 199  Q
    |    
T  27829358 g 27829358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 6790408 - 6790499
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||||  || ||||||||||| ||||| |||||   ||  || ||||||||| |||||||||| |||||||| ||||| ||||||||    
T  6790408 gcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtg 6790499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 146
Target Start/End: Complemental strand, 8382355 - 8382296
Alignment:
Q  87 atagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttga 146  Q
    |||||||||||||||||||| ||||  ||||| || ||||||||||||| ||| ||||||    
T  8382355 atagtgttggttgggttagaggcagtctgattcttagcagcatcaccaaccaacctttga 8382296  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 1302309 - 1302391
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttg 190  Q
    ||||| ||||| || ||||||||||| ||||| ||||||  ||  || ||||||||| |||| |||||||||||||| |||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 1302391  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 29581301 - 29581172
Alignment:
Q  76 aattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgt 175  Q
    |||||||| |||||||||| |||||||| |  ||||| |||||||| ||||||| || |||||| ||  | || | ||| ||||| |||  |||||||||    
T  29581301 aattaccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgt 29581202  T
Q  176 tgttttgtttccttgatcattgtgtatgat 205  Q
     |||   || |||||||||||||| |||||    
T  29581201 ggttccattgccttgatcattgtggatgat 29581172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 17269140 - 17269192
Alignment:
Q  150 ttagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtat 202  Q
    |||| |||||||||| |||| || || |||||||| |||||||||||||||||    
T  17269140 ttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtat 17269192  T

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Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 12529833 - 12529984
Alignment:
Q  75 gaattaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtg 174  Q
    ||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12529833 gaattaccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtg 12529932  T
Q  175 ttgttttgtttccttgatcattgtgtatgatttccacacgatcgttttgctc 226  Q
    ||||||||||||||||||||||||| || ||||||||||||||  |||||||    
T  12529933 ttgttttgtttccttgatcattgtgaattatttccacacgatcagtttgctc 12529984  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 43745827 - 43745910
Alignment:
Q  113 ttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    |||||| || ||||| ||||| ||||| |||| |  || ||||||||||||| ||||||   |||||||||| ||||||||||||||    
T  43745827 ttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtg 43745910  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 12258019 - 12257921
Alignment:
Q  107 agcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgat 205  Q
    |||||||||||| || ||||||||||||||||| ||||||   ||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgat 12257921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 12244514 - 12244400
Alignment:
Q  101 gttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgt 200  Q
    ||||| ||||||||||||||| |||||||||||||| || ||||||   | ||| |||||||||||||||||||||||| |||| || ||||| |||||     
T  12244514 gttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtga 12244415  T
Q  201 atgatttccacacga 215  Q
    |||||||| ||||||    
T  12244414 atgatttcaacacga 12244400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 16656714 - 16656607
Alignment:
Q  98 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattg 197  Q
    ||||||||  ||| ||||||| || ||||||||||| ||||| ||||||  || ||| ||||||||| |||||||||||||| ||||||| || ||||||    
T  16656714 tgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattg 16656615  T
Q  198 tgtatgat 205  Q
    ||||||||    
T  16656614 tgtatgat 16656607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 12000334 - 12000431
Alignment:
Q  111 gcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatttc 208  Q
    ||||| ||||| |||||||||||||  || ||||||   | ||| ||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||    
T  12000334 gcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttc 12000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 205
Target Start/End: Original strand, 12235787 - 12235893
Alignment:
Q  99 gggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    ||||| |||||||||||||| || ||||||||||||||||| || |||   |  || ||||||||| ||||||| |||||| | || |||||||| ||||    
T  12235787 gggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgt 12235886  T
Q  199 gtatgat 205  Q
    | |||||    
T  12235887 gaatgat 12235893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 16661171 - 16661079
Alignment:
Q  107 agcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    |||||||||||  || |||||| |||| | ||| ||||||| || ||||||||||||| ||||||||||  ||||||| |||| ||| |||||    
T  16661171 agcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtg 16661079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 43626333 - 43626409
Alignment:
Q  123 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||||||||||| |||||    ||||| |||| |||| |||||||||| ||| |||||||||| ||||||||    
T  43626333 gcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtg 43626409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 7543266 - 7543397
Alignment:
Q  99 gggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    ||||| |||||||||||||| || |||  |||||| ||||| || |||   |  || ||||||||| |||||||||||||| |||| ||||| || ||||    
T  7543266 gggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgt 7543365  T
Q  199 gtatgatttccacacgatcgttttgctcctgc 230  Q
    | |||||||| || |||| || ||| ||||||    
T  7543366 gaatgatttcaactcgatagtgttgatcctgc 7543397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 35133451 - 35133552
Alignment:
Q  107 agcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgtatgatt 206  Q
    |||||||||||| || ||||||||||| ||||| ||||||   ||||| ||||||| ||||||||||||||||||||| | |||||| ||||| ||||||    
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatt 35133550  T
Q  207 tc 208  Q
    ||    
T  35133551 tc 35133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 9323198 - 9323077
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||||||||||    ||||||| ||||| |||||| || ||||||||||||||||| |||||   |||  | ||||||||| ||||||||||||    
T  9323198 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9323099  T
Q  178 ttttgtttccttgatcattgtg 199  Q
    ||  ||||||||||||||||||    
T  9323098 ttcggtttccttgatcattgtg 9323077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 9377677 - 9377556
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||||||||||    ||||||| ||||| |||||| || ||||||||||||||||| |||||   |||  | ||||||||| ||||||||||||    
T  9377677 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9377578  T
Q  178 ttttgtttccttgatcattgtg 199  Q
    ||  ||||||||||||||||||    
T  9377577 ttcggtttccttgatcattgtg 9377556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 9335169 - 9335049
Alignment:
Q  78 ttaccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttg 177  Q
    |||||| ||||||||||    ||||||| ||||| |||||| || |||||||||||| |||| |||||   |||  | ||||||||| ||||||||||||    
T  9335169 ttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttg 9335071  T
Q  178 ttttgtttccttgatcattgtg 199  Q
    ||  ||||||||||||||||||    
T  9335070 ttcggtttccttgatcattgtg 9335049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 42554276 - 42554200
Alignment:
Q  123 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||||||||||| |||| |  || ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtg 42554200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 28220950 - 28221036
Alignment:
Q  113 ttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||| |||||||| |||||||| |||| |  ||  || ||||||||| ||||||| ||||||||||| ||||||||||||||    
T  28220950 ttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtg 28221036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 4677644 - 4677554
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 198  Q
    |||| |||||| || ||||||| ||||||||| ||||||  || ||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  4677644 gcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt 4677554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 34465362 - 34465262
Alignment:
Q  98 tgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattg 197  Q
    |||||| | ||||| |||||| || ||||||| ||| ||||||||||||  || ||||||||||||| |||||||||| ||| |||| ||||| ||||||    
T  34465362 tgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattg 34465263  T
Q  198 t 198  Q
    |    
T  34465262 t 34465262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 15596057 - 15596148
Alignment:
Q  108 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtg 199  Q
    ||||||||| | || ||||||||||||||||| ||||||  |||||| |||| |||| ||||||||||  || |||||||||| ||||||||    
T  15596057 gcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtg 15596148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 11159653 - 11159709
Alignment:
Q  123 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgtt 179  Q
    |||||||||||||||| ||||||||| | ||| || |||||| ||||||||||||||    
T  11159653 gcagcatcaccaatcattctttgagagtcagtgaaggcaacataagaaggtgttgtt 11159709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 11278609 - 11278676
Alignment:
Q  123 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttg 190  Q
    |||||||||||||||| ||||| ||| ||  | || ||||||||||||||||||||| |||| |||||    
T  11278609 gcagcatcaccaatcattctttcagagtttttgaatgcaacacaagaaggtgttgttctgttcccttg 11278676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 11134316 - 11134372
Alignment:
Q  123 gcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgtt 179  Q
    |||| ||||||||||| ||||||||| | ||| || |||||| ||||||||||||||    
T  11134316 gcaggatcaccaatcattctttgagagtcagtgaatgcaacataagaaggtgttgtt 11134372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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