View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_61 (Length: 249)
Name: NF5039_low_61
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 2580109 - 2579890
Alignment:
| Q |
17 |
attaaaaatgaagggttaagtcctaaacttagttggttaggaaatatctaacaggggcggtggggcttacttacagcttgaatgaaatttggatctgagg |
116 |
Q |
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| T |
2580109 |
attaaaaatgaagggttaagtcctaaacttagttggttaggaaatatctaacaggggcggtggggcttacttacaacttgaatgaaatttggatttgagg |
2580010 |
T |
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| Q |
117 |
aagtgtatatgacaggtattgggataaactgagaaagatgtctacttgaatgtcaacttgaattaccgaaagatagcttatggttggtgaggggcttttg |
216 |
Q |
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| T |
2580009 |
aagtgtatatgacaggtattgggataaactgagaaagatgtctacttgaatgccaacttgaattaccgaaagatagcttatggttggtgaggggcttttg |
2579910 |
T |
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| Q |
217 |
gagcaatactagaggcgcac |
236 |
Q |
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| T |
2579909 |
gagcaatactagaggcgcac |
2579890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 11379160 - 11379378
Alignment:
| Q |
17 |
attaaaaatgaagggttaagtcctaaacttag----ttggttaggaaatatctaacaggggcggtggggcttacttacagcttgaatgaaatttggatct |
112 |
Q |
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| T |
11379160 |
attaaaaatgaagggttaagtcccaatcttagctggttggttaggaaatacctaacaggggcggtagggcttactttcaacttgaatgaaatttggattt |
11379259 |
T |
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| Q |
113 |
gaggaagtgtatatgacaggtattgggataaactgagaaagatgtctacttgaatgtcaa-------cttgaattaccgaaagatagcttatggttggtg |
205 |
Q |
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| T |
11379260 |
gaggaagtgtatatgacaggtattgggataaactgagaaaaatgtctacttgaatgccaactcgagtctcgaattaccg-aagatagcttagggttggtg |
11379358 |
T |
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| Q |
206 |
aggggcttttggagcaatac |
225 |
Q |
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| T |
11379359 |
aggggcttttggagcaatac |
11379378 |
T |
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