View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_63 (Length: 242)
Name: NF5039_low_63
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_63 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 1191166 - 1191383
Alignment:
| Q |
15 |
atatttttatgtatttgtaaattaaaatggggtaaacatttttacgtgaaatatcacttctctcctaaaccctaatctcccgagagaaagcgagaactgt |
114 |
Q |
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| T |
1191166 |
atatttttatgtatttgtaaattaaaatggggtaaacatttttacgtgaaatatcacttctctcctaaaccctaatctcccgagagaaagcgaaaactgt |
1191265 |
T |
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| Q |
115 |
tttctgacttctcttctcaatcaccgcaggaaagtgaaaagttagggtttttcagctccagcatagattgcagcaggtaacaataccacttctcatcatt |
214 |
Q |
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| T |
1191266 |
tttctgacttctcttctcaatcaccgcaggaaagtgaaaagttagggtttttcagctccagcacagattgcagcaggtaacgataccacttctcatcatt |
1191365 |
T |
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| Q |
215 |
gtttgatttgtgttcata |
232 |
Q |
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| T |
1191366 |
gtttgatttgtgttcata |
1191383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 232
Target Start/End: Original strand, 1177973 - 1178126
Alignment:
| Q |
77 |
tcctaaaccctaatctcccgagagaaagcgagaactgttttctgacttctcttctcaatcaccgcaggaaagtgaaaagttagggtttttcagctccagc |
176 |
Q |
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| T |
1177973 |
tcctaaaccctaatttcccgatagaa-gcaaaaacggttttctgacttctcttctcaatcacagcacaaaagtgaaaagttagggtttctaagttctagc |
1178071 |
T |
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| Q |
177 |
atagattgcagcaggtaacaataccacttctcatcattgtttgatttgtgttcata |
232 |
Q |
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| T |
1178072 |
acagattgcaacaggtaacaatatcgcttctcatcattg-ttgatttatgttcata |
1178126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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