View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_66 (Length: 240)
Name: NF5039_low_66
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 29654396 - 29654171
Alignment:
| Q |
1 |
aaaaattagtggaaatcaagctggtctaattagaagacatctttatgtagtagcatacaaatttaaccaataaccttagctttacaagcatgatcaattt |
100 |
Q |
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| T |
29654396 |
aaaaattagtggaaatcaagctggtctaattagaagacatctttatgtagtagcatacaaatttaaccaataaccttagctttacaagcatgatcaattt |
29654297 |
T |
|
| Q |
101 |
cttgacttaaacttattgaacactatcacatgtaaaatctatccaaaatcaaatacgtttgattctttactaacacatctttttctcaaaatggttttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29654296 |
cttgacttaaacttattgaacactatcacatgtaaaatctatccaaaatcaaatacgtttgattctttactaacacatctttttctcaaaatggttttgt |
29654197 |
T |
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| Q |
201 |
ttggaaattatgtggccacctttatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29654196 |
ttggaaattatgtggccacctttatg |
29654171 |
T |
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