View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5039_low_68 (Length: 238)
Name: NF5039_low_68
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_68 |
 |  |
|
| [»] chr5 (13 HSPs) |
 |  |
|
| [»] chr4 (1 HSPs) |
 |  |
|
| [»] chr7 (2 HSPs) |
 |  |
|
| [»] scaffold0627 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 8528774 - 8528995
Alignment:
| Q |
17 |
aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528774 |
aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
8528873 |
T |
 |
| Q |
117 |
atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528874 |
atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca |
8528973 |
T |
 |
| Q |
217 |
ccttcttcaaagtgttttatcg |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8528974 |
ccttcttcaaagtgttttatcg |
8528995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 8535333 - 8535548
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8535333 |
ttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaattt |
8535432 |
T |
 |
| Q |
121 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
220 |
Q |
| |
|
| |||||| | |||||||||||||| ||| |||||||| |||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
8535433 |
gaactactcccgtaaattcgaaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcacctt |
8535532 |
T |
 |
| Q |
221 |
cttcaaagtgttttat |
236 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8535533 |
cttcaaagtgttttat |
8535548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 9074994 - 9074777
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |
|
|
| T |
9074994 |
ttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatatgtgggattacttcaaaaaacttt |
9074895 |
T |
 |
| Q |
121 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
9074894 |
gaatgactcccatgaattcgaaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcacctt |
9074795 |
T |
 |
| Q |
221 |
cttcaaagtgttttatcg |
238 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9074794 |
cttcaaagtgttttatcg |
9074777 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 1600554 - 1600340
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||| ||||||| ||| | |
|
|
| T |
1600554 |
ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatatgcgggattatttcaaaacaatct |
1600455 |
T |
 |
| Q |
121 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
220 |
Q |
| |
|
||||||||||||||| |||| ||||| | | |||||| ||||||| || ||| | |||||||| | ||| |||| |||||||||||||||||| |
|
|
| T |
1600454 |
gaacgactcccatgaatttcaaaagctttgcatcgatatttcgcaggttcataatagattaaacaatt---gtaatcatataacaatatggcagcacctt |
1600358 |
T |
 |
| Q |
221 |
cttcaaagtgttttatcg |
238 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
1600357 |
cttcaaagtgttgtatcg |
1600340 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 8677637 - 8677851
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8677637 |
ttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8677735 |
T |
 |
| Q |
121 |
atccgac-tcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
219 |
Q |
| |
|
|| | || |||||||||||||||||||| |||| ||| || ||||| |||||| ||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
8677736 |
ggaagaagtgccgtgaattcgaaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccc |
8677835 |
T |
 |
| Q |
220 |
tcttcaaagtgtttta |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
8677836 |
tcttcaaagtgtttta |
8677851 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 8636701 - 8636913
Alignment:
| Q |
23 |
accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttat |
122 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||||||||||| ||||| |||| ||||| | | | |
|
|
| T |
8636701 |
accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaacatgtggaattatttcaacaaactcgga |
8636800 |
T |
 |
| Q |
123 |
ccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttct |
222 |
Q |
| |
|
| | || ||||||| |||||||||||| ||| ||| || ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || ||| |
|
|
| T |
8636801 |
agaagtgccttgaattctaaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctct |
8636900 |
T |
 |
| Q |
223 |
tcaaagtgtttta |
235 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8636901 |
tcaaagtgtttta |
8636913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 8644044 - 8644258
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||| ||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||||| | |||| |
|
|
| T |
8644044 |
ttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaacatgtggaattatttcaaca-aattc |
8644142 |
T |
 |
| Q |
121 |
atccg-actcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacct |
219 |
Q |
| |
|
| | | || |||||||||||||||||||| ||| ||| | ||||| |||||| ||| ||||||| ||||||||||| ||||||||||||| || |
|
|
| T |
8644143 |
ggaagaaatgccgtgaattcgaaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccc |
8644242 |
T |
 |
| Q |
220 |
tcttcaaagtgtttta |
235 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
8644243 |
tcttcaaagtttttta |
8644258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 8548365 - 8548151
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||| | ||||||||||| | | | |
|
|
| T |
8548365 |
ttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatatgttgaattacttcaaatgattgt |
8548266 |
T |
 |
| Q |
121 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcacctt |
220 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||| || || | ||||| |||||||||| | ||||||||| |||||| ||||||||| | |
|
|
| T |
8548265 |
gaagaagagccatgaattcgaaaatctttgactccatatttatcggggttatagtaagtaaaacaatccaatgaatgatataacaatacggcagcaccct |
8548166 |
T |
 |
| Q |
221 |
cttcaaagtgtttta |
235 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8548165 |
cttcaaagtgtttta |
8548151 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 8641242 - 8641297
Alignment:
| Q |
57 |
tcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
112 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
8641242 |
tcctttcacgacatccttcaatgagattagacttggaatatgtggaattacttcaa |
8641297 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2857018 - 2856974
Alignment:
| Q |
128 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2857018 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2856974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2874628 - 2874584
Alignment:
| Q |
128 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
172 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2874628 |
tcccttgaattcgaaaaactttgaacccatgtttctcaggttcgt |
2874584 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 9003305 - 9003393
Alignment:
| Q |
24 |
ccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaa |
112 |
Q |
| |
|
|||||||| || ||||| ||||||| |||| |||| || | | | ||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
9003305 |
ccttgagtagacattcaacacctcaacattgtctccatttacagcctccttcaatgagattagacttggaatatgtggaattacttcaa |
9003393 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 2845191 - 2845147
Alignment:
| Q |
128 |
tcccatgaattcgaaaaactttgaacccatatttttcaggttcgt |
172 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
2845191 |
tcccttgaattcgaaaaactttgaactcatgtttctcaggttcgt |
2845147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 9442935 - 9443156
Alignment:
| Q |
17 |
aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9442935 |
aattttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgttggattacttcaaaata |
9443034 |
T |
 |
| Q |
117 |
atttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagca |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9443035 |
atttttccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagca |
9443134 |
T |
 |
| Q |
217 |
ccttcttcaaagtgttttatcg |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9443135 |
ccttcttcaaagtgttttatcg |
9443156 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48362128 - 48361906
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaatta-----gacttggaatgtgtgggattacttcaaaat |
115 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
48362128 |
ttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaattaaattagacttggaatatgtgggattacttcaaaag |
48362029 |
T |
 |
| Q |
116 |
aatttatccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagc |
215 |
Q |
| |
|
|| | |||||||| ||||| ||||| ||||| | | |||||| |||||||| || ||| | |||| | | ||||||||||| ||||||||||||| |
|
|
| T |
48362028 |
aacctgaacgactcccgtgaatatgaaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagc |
48361929 |
T |
 |
| Q |
216 |
accttcttcaaagtgttttatcg |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48361928 |
accttcttcaaagtgttttatcg |
48361906 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 213
Target Start/End: Original strand, 35779694 - 35779861
Alignment:
| Q |
46 |
tcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataatttatccgactcccatgaattcgaaaaa |
145 |
Q |
| |
|
||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||| | | ||| ||| ||||| |||||||||||| |
|
|
| T |
35779694 |
tcaatattgtctccttttacaacatccttcaatgatattagacttggaatatgtggaattacttcaacagattttgaacgagtcccacgaattcgaaaaa |
35779793 |
T |
 |
| Q |
146 |
ctttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggca |
213 |
Q |
| |
|
||||| | |||||||| |||||||| ||||| ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
35779794 |
ctttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca |
35779861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 5130638 - 5130853
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaataattt |
120 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||| || |||||| | |||||||||||||| ||| ||||| |||||||||| | ||| |
|
|
| T |
5130638 |
ttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagacttgaaatatgtggaattacttcaatctttttt |
5130737 |
T |
 |
| Q |
121 |
atccgactcccatgaattcgaaaaactttgaacccatatttttcaggttcgtagt-aggtaaaacaattggaggaatgatatgacaatatggcagcacct |
219 |
Q |
| |
|
| | ||||||||||||||||||||||| | | |||||| || ||||| | || || |||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
5130738 |
gaacaagtcccatgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccc |
5130837 |
T |
 |
| Q |
220 |
tcttcaaagtgtttta |
235 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5130838 |
tcttcaaagtgtttta |
5130853 |
T |
 |
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Target: scaffold0627 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 4492 - 4587
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaata |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
4492 |
ttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatatgtggaattacttcaaaata |
4587 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 16716179 - 16716272
Alignment:
| Q |
21 |
ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaatgtgtgggattacttcaaaa |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||| |
|
|
| T |
16716179 |
ttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatatgtggaattactttaaaa |
16716272 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 16716299 - 16716405
Alignment:
| Q |
129 |
cccatgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaag |
228 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | ||| || ||||| |||||||||| ||||||||| |||||| | ||||||| ||||||||| |
|
|
| T |
16716299 |
cccatgaattcgaaaacgcttgacaccatatttattaggctcatagtaagtaaaacaatcatttgaatgatataacaatacgccagcaccctcttcaaag |
16716398 |
T |
 |
| Q |
229 |
tgtttta |
235 |
Q |
| |
|
||||||| |
|
|
| T |
16716399 |
tgtttta |
16716405 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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