View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_69 (Length: 238)
Name: NF5039_low_69
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 37841562 - 37841356
Alignment:
| Q |
16 |
attcggacatgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaat |
115 |
Q |
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| T |
37841562 |
attcgaacatgagagttgttgttgaacaaccaaaacagatgcactactattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaat |
37841463 |
T |
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| Q |
116 |
tcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaag |
215 |
Q |
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| T |
37841462 |
tcactccattctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactataaaaaaatcatgttcattcattatctcacgtagaaaag |
37841363 |
T |
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| Q |
216 |
atgccgt |
222 |
Q |
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||||||| |
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| T |
37841362 |
atgccgt |
37841356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 38380706 - 38380900
Alignment:
| Q |
25 |
tgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccat |
124 |
Q |
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||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38380706 |
tgagagttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccat |
38380805 |
T |
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| Q |
125 |
tctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
219 |
Q |
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| T |
38380806 |
tctgctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38380900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 38389572 - 38389766
Alignment:
| Q |
25 |
tgagagttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccat |
124 |
Q |
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|||||||||||| || || ||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38389572 |
tgagagttgttgctgcacaaccaaaacagatgcattactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccat |
38389671 |
T |
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| Q |
125 |
tctgccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
219 |
Q |
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| T |
38389672 |
tctgctaatccatcggtttgaggatattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38389766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 38398339 - 38398529
Alignment:
| Q |
29 |
agttgttgttgaacgaccaaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctg |
128 |
Q |
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||||||||||| || ||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
38398339 |
agttgttgttgcacaaccaaaacagatgcactactattaagatcaggtgaaacaagaaaatcaccaatagcaccgagttctggaaattcactccattctg |
38398438 |
T |
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| Q |
129 |
ccaatccatctgtttgaggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
219 |
Q |
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| T |
38398439 |
ctaatccatcagtttgaggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38398529 |
T |
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