View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_7 (Length: 658)

Name: NF5039_low_7
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_7
NF5039_low_7
[»] chr3 (1 HSPs)
chr3 (1-639)||(52761335-52761973)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 52761973 - 52761335
Alignment:
Q  1 tatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761973 tatctgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgct 52761874  T
Q  101 tcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761873 tcacaggtacctataacatctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttctt 52761774  T
Q  201 ttgattttcatttggaaatttgaccaaaatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatttacta 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761773 ttgattttcatttggaaatttgaccaagatctatcattatcatgaaatctaattctgctaacatttttattatgagacattttacacaactgatttacta 52761674  T
Q  301 gaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcccgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52761673 gaccagattggaaagcttacggttttatcaaataggttaaaagatgtggggaaatgtcgcgtaagttgcgtttatttaaggagcaaatgaaaaaggcaaa 52761574  T
Q  401 tatatctccgtcaacatggtcaacgagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttctaccgta 500  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52761573 tatatctccgtcaacatggtcaacaagagatggttctattgatctagaaaaattggaggttgtcaggtgtttttaaaattttcatatcttttctaccgta 52761474  T
Q  501 catttaagatagcattgccatgcaacacaatttttcttcatggatataggttaaactagcagaacttgaagctgagctaattgagattaattcaaacaat 600  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52761473 catttaagagagcattgccatgtaacacaatttttcttcatggatataggttaaactagcagaacttgaagccgagctaattgagattaattcaaacaat 52761374  T
Q  601 gagaagttgcagcacacttataatgaacttatagagtac 639  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52761373 gagaagttgcagcacacttataatgaacttatagagtac 52761335  T

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