View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_71 (Length: 237)
Name: NF5039_low_71
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 49653754 - 49653530
Alignment:
| Q |
16 |
gaaatgacagtgattttgggtttagcaaagtaaga---tttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaag |
112 |
Q |
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| T |
49653754 |
gaaatgacagtgattttgggtttagcaaagtaagaagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaag |
49653655 |
T |
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| Q |
113 |
ttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatg |
212 |
Q |
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| T |
49653654 |
ttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatg |
49653555 |
T |
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| Q |
213 |
tctgtgaaacaaaaccaactttagc |
237 |
Q |
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| T |
49653554 |
tctgtgaaacaaaaccaagtttagc |
49653530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 14382068 - 14382151
Alignment:
| Q |
133 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctg |
216 |
Q |
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|||||||||||||| || | |||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtggatagaaactttcaagaaccatgtctg |
14382151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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