View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_73 (Length: 236)
Name: NF5039_low_73
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 30007171 - 30006958
Alignment:
| Q |
7 |
catgtcgaagaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30007171 |
catgtcgagcaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
30007072 |
T |
|
| Q |
107 |
acaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatcgagggctttactggnnnnnnngc |
206 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30007071 |
acaaagtcttcattacgagttttgtcagtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatcgagggctttactggtttttttgc |
30006972 |
T |
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| Q |
207 |
aagctcgtgttaat |
220 |
Q |
| |
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|||||||||||||| |
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| T |
30006971 |
aagctcgtgttaat |
30006958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 29995382 - 29995258
Alignment:
| Q |
7 |
catgtcgaagaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29995382 |
catgtcgagcaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
29995283 |
T |
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| Q |
107 |
acaaaatcttcattacgagttttgt |
131 |
Q |
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|||||||||| || | ||||||||| |
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| T |
29995282 |
acaaaatctttatgatgagttttgt |
29995258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 30001055 - 30000871
Alignment:
| Q |
7 |
catgtcgaagaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
106 |
Q |
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|||||||| ||||||||||||||| | ||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
30001055 |
catgtcgagcaaaatagccttgatgatcgttcgatcaatgacgagatcttgtccaccctcaacatcaatggtttggtgcataattgaaagaactgtgtct |
30000956 |
T |
|
| Q |
107 |
acaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatcgagggctttactgg |
197 |
Q |
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||||||||| ||| || | ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||| |
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| T |
30000955 |
acaaaatct---ttagga---tcgtctgtattagtagtttgttcatgctctgttattatcatctccaaaacttcatcaagagctttactgg |
30000871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 30043827 - 30043936
Alignment:
| Q |
7 |
catgtcgaagaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
30043827 |
catgtcgagcaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcaatatcaatggtttggtgcataattgaaagaagtatgtct |
30043926 |
T |
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| Q |
107 |
acaaaatctt |
116 |
Q |
| |
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|||||||||| |
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| T |
30043927 |
acaaaatctt |
30043936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 30068345 - 30068469
Alignment:
| Q |
7 |
catgtcgaagaaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtct |
106 |
Q |
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|||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30068345 |
catgtcgagcaaaatagctttgatgttagatcgatcaattacgagattttgttcaccctcgacatcaatggtttgatgcataattgaaagaagtatgtct |
30068444 |
T |
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| Q |
107 |
acaaaatcttcattacgagttttgt |
131 |
Q |
| |
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|| ||||||| || | ||||||||| |
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| T |
30068445 |
acgaaatctttatgatgagttttgt |
30068469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 29944680 - 29944505
Alignment:
| Q |
17 |
aaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctt |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| | | ||||||| |||||||| ||| | ||||||||||||||||| |||| |
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| T |
29944680 |
aaaatagctttgatgttagttcgatcaatgacatgattttgttcactcccatgatcaatgttttggtgcttaaaagtgagaagtatgtctacaaagtctt |
29944581 |
T |
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| Q |
117 |
cattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaacctcatcgagggcttt |
192 |
Q |
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||| ||||||||||||||||||||| || ||||| ||||||| ||||||||||||||| |||||||| || ||||| |
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| T |
29944580 |
catgacgagttttgtctgtattagtggtttgttcatgctctgatattatcatctccaacacctcatcaagtgcttt |
29944505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 29953613 - 29953469
Alignment:
| Q |
17 |
aaaatagccttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctt |
116 |
Q |
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|
||||| ||||||||||||||||||||||||| |||||| |||| || | |||||||||||||||||||| || |||||||||||| ||||| |||| |
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| T |
29953613 |
aaaattgccttgatgttagttcgatcaatgaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtctt |
29953514 |
T |
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| Q |
117 |
cattacgagttttgtctgtattagtagtctgttcgtgctctgtta |
161 |
Q |
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||| ||| |||||||| |||||| || ||||| |||||||||| |
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| T |
29953513 |
catggcgatttttgtctacattagtggtttgttcatgctctgtta |
29953469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 29946595 - 29946502
Alignment:
| Q |
74 |
atggtttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatca |
167 |
Q |
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|||||||||| | ||||||| || ||||||||||| || ||||||| | ||||||||||| |||||| || ||||| |||||||||||||||| |
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| T |
29946595 |
atggtttggttcttaattgagagtagtatgtctacgaagtcttcatgatgagttttgtctacattagttgtttgttcatgctctgttattatca |
29946502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 194
Target Start/End: Complemental strand, 29964821 - 29964704
Alignment:
| Q |
77 |
gtttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaa |
176 |
Q |
| |
|
|||||||||| |||||| |||||||| || | |||||||||| |||| ||||||| |||||| | ||||| |||||||| |||||||||||||| | |
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| T |
29964821 |
gtttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaata |
29964722 |
T |
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| Q |
177 |
cctcatcgagggctttac |
194 |
Q |
| |
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||||||| || ||||||| |
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| T |
29964721 |
cctcatcaagtgctttac |
29964704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 30009977 - 30010094
Alignment:
| Q |
77 |
gtttggtgcataattgaaagaagtatgtctacaaaatcttcattacgagttttgtctgtattagtagtctgttcgtgctctgttattatcatctccaaaa |
176 |
Q |
| |
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|||||||||| |||||| |||||||| || | |||||||||| |||| ||||||| |||||| | ||||| |||||||| |||||||||||||| | |
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| T |
30009977 |
gtttggtgcacaattgagagaagtatatcaatgaaatcttcatgacgaactttgtctacattagtgctttgttcatgctctgtaattatcatctccaata |
30010076 |
T |
|
| Q |
177 |
cctcatcgagggctttac |
194 |
Q |
| |
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||||||| || ||||||| |
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|
| T |
30010077 |
cctcatcaagtgctttac |
30010094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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