View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5039_low_74 (Length: 236)
Name: NF5039_low_74
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5039_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 40059391 - 40059175
Alignment:
| Q |
1 |
tcaatccaaatgagtcaaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttcttttcctgcaagcaatgcaa |
100 |
Q |
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| T |
40059391 |
tcaatccaaacgagtctaaaaatgtgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttctttttctgcaagcaatgcaa |
40059292 |
T |
|
| Q |
101 |
acttttccttcacacatgaacaaattcaatacaatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacagg |
200 |
Q |
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| T |
40059291 |
acttttccttcacacatgaacaaattcaatacaatgctcaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacagg |
40059192 |
T |
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| Q |
201 |
ttcatgtaagttccaga |
217 |
Q |
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||||||||||||||||| |
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| T |
40059191 |
ttcatgtaagttccaga |
40059175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 40085198 - 40085113
Alignment:
| Q |
132 |
caatgctaaaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccaga |
217 |
Q |
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| T |
40085198 |
caatgctcaaagaaaatggtaagaatgtaagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccaga |
40085113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 40077280 - 40077203
Alignment:
| Q |
140 |
aaagaaaatggtaagaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccaga |
217 |
Q |
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| T |
40077280 |
aaagaaagtggtaaaaatgtgagagaagaaatgaagcaaagagaacctggcctttaacaggttcatgtaagttccaga |
40077203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 40085279 - 40085207
Alignment:
| Q |
25 |
tgttcagtcatgctttcaacaattagcaattcggcttaacatagacacttgttttcttttcctgcaagcaatg |
97 |
Q |
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| T |
40085279 |
tgttcagtcatgctttcaacaattagcaattcagcttaacatagacacttgttttcttttcctgcaagcaatg |
40085207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 35052814 - 35052864
Alignment:
| Q |
35 |
tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc |
85 |
Q |
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| T |
35052814 |
tgctttcaacaattagcaattcagcttaacatacacacttgttttcttttc |
35052864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12735614 - 12735664
Alignment:
| Q |
35 |
tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc |
85 |
Q |
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| T |
12735614 |
tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc |
12735664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 12798441 - 12798491
Alignment:
| Q |
35 |
tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc |
85 |
Q |
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|||||||||||||||| ||||| |||||| ||| || |||||||||||||| |
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| T |
12798441 |
tgctttcaacaattagaaattcagcttaatatacacgcttgttttcttttc |
12798491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 53322700 - 53322651
Alignment:
| Q |
35 |
tgctttcaacaattagcaattcggcttaacatagacacttgttttcttttc |
85 |
Q |
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|||||||||||||||||||||| | |||| ||| ||||||||||||||||| |
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| T |
53322700 |
tgctttcaacaattagcaattcagattaa-atacacacttgttttcttttc |
53322651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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