View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5039_low_77 (Length: 231)

Name: NF5039_low_77
Description: NF5039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5039_low_77
NF5039_low_77
[»] chr1 (1 HSPs)
chr1 (17-216)||(6354205-6354411)
[»] chr2 (2 HSPs)
chr2 (119-176)||(3278204-3278261)
chr2 (118-173)||(28770613-28770668)
[»] chr4 (1 HSPs)
chr4 (129-176)||(37782077-37782124)
[»] chr8 (1 HSPs)
chr8 (118-160)||(31513184-31513227)
[»] chr5 (1 HSPs)
chr5 (118-156)||(30900069-30900108)
[»] scaffold0016 (1 HSPs)
scaffold0016 (119-174)||(102332-102387)
[»] chr6 (1 HSPs)
chr6 (129-173)||(33721398-33721441)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 6354411 - 6354205
Alignment:
Q  17 atcatccgcaaatcgtaaaataggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354411 atcatccgcaaatcgtaaaataggaaaagatcgatggagttattcatgaaacacctcttcaaagagccgatttccaccatttttgctaccaaactcgtca 6354312  T
Q  117 at------atccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcc 209  Q
    ||      |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354311 atcctttgatccttcctctaatgagatctcactacccaaagtgtttacaaagtgttttccaacccaataacgttagcctctaaaattactaaaagtttcc 6354212  T
Q  210 tcctttg 216  Q
    |||||||    
T  6354211 tcctttg 6354205  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 3278204 - 3278261
Alignment:
Q  119 atccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 176  Q
    |||| |||| |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaa-tgttttccaacccaa 3278261  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 28770668 - 28770613
Alignment:
Q  118 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacc 173  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  28770668 tatccttcagctaatgagatctcactacccaaggtgtttacaaa-tgttttccaacc 28770613  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 37782077 - 37782124
Alignment:
Q  129 taatgaaatctcacta-ccaaggtgtttacaaagtgttttccaacccaa 176  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  37782077 taatgaaatctcactacccaaggtgtttacaaa-tgttttccaacccaa 37782124  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 31513227 - 31513184
Alignment:
Q  118 tatccttcctctaatgaaatctcacta-ccaaggtgtttacaaa 160  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  31513227 tatccttcctctaatgaaatctcactattcaaggtgtttacaaa 31513184  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 30900069 - 30900108
Alignment:
Q  118 tatccttcctctaatgaaatctcacta-ccaaggtgttta 156  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  30900069 tatccttcctctaatgaaatctcactacccaaggtgttta 30900108  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 102387 - 102332
Alignment:
Q  119 atccttcctctaatgaaatctcac-taccaaggtgtttacaaagtgttttccaaccc 174  Q
    |||||||||||||| |||||| || ||||||||||||| |||| |||||||||||||    
T  102387 atccttcctctaataaaatcttacttaccaaggtgttttcaaa-tgttttccaaccc 102332  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 33721441 - 33721398
Alignment:
Q  129 taatgaaatctcactaccaaggtgtttacaaagtgttttccaacc 173  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||    
T  33721441 taatgaaatctcactacaaaggtgtttacaaa-tgtttcccaacc 33721398  T

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