View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040-Insertion-10 (Length: 528)
Name: NF5040-Insertion-10
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-10 |
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Alignment Details
Target: chr7 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 33274178 - 33273658
Alignment:
| Q |
8 |
cttaacaacagaaaaggcgacaaaaaacaggaagatggcgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaa |
107 |
Q |
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| T |
33274178 |
cttaacaacagaaaaggcgacaaaaaacaggaagatggtgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaa |
33274079 |
T |
|
| Q |
108 |
gcaatgatgataacaaggagagcactctttcgacctgtgctactcgaaatacagaactatttgaggatgcttacaaaccagatttgagcaattgcaagga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33274078 |
gcaatgatgataacaaggagagcactctttcgacctgtgctactcgaaatacagaactatttgaggatgcttacaaaccagatttgagcaattgcaagga |
33273979 |
T |
|
| Q |
208 |
agtttttgagtcaggttcacaatccaatatttcatgtggttttggacctttctttgatcatttttcttttactcagttattggatatggcgaagaatgat |
307 |
Q |
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| T |
33273978 |
agtttttgagtcaggttcacaatccaacatttcatgtggttttggacctttctttgatcatttttcttttactcagttattggatatggcgaagaatgat |
33273879 |
T |
|
| Q |
308 |
gacataaccgatgcatctagcttggagctttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273878 |
gacataaccgatgcatctagcttggagctttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatg |
33273779 |
T |
|
| Q |
408 |
aatacatggaaactgttcaagagtctaatgaagccttatgggatcttccacccttgtgctccttgttctgtt-aaacttttataaggtctaaattaatga |
506 |
Q |
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| T |
33273778 |
aatacatggaaactgttcaagagtctaatgaagccttatgggatcttccacccttgtgctccttgttctgttaaaacttttataaggtctaaattaatga |
33273679 |
T |
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| Q |
507 |
atctgcaaatgtttcttccaa |
527 |
Q |
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| T |
33273678 |
atctgcaaatgtttcttccaa |
33273658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 467
Target Start/End: Original strand, 10030635 - 10030766
Alignment:
| Q |
336 |
tttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatgaatacatggaaactgttcaagagtctaa |
435 |
Q |
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|||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| || || || |||||| ||| |||||| || | || |
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| T |
10030635 |
tttcagaatttgaaaggatgaaagttgaaaggcaaatatcagcttcactttatgcaattaatggtgttcaagagtacatgaaaaatgttcaggattgcaa |
10030734 |
T |
|
| Q |
436 |
tgaagccttatgggatcttccacccttgtgct |
467 |
Q |
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| T |
10030735 |
tgaagctcaatggaatctttcacctttgtgct |
10030766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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