View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040-Insertion-11 (Length: 506)
Name: NF5040-Insertion-11
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 506
Target Start/End: Complemental strand, 6842462 - 6841964
Alignment:
| Q |
8 |
aaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccact |
107 |
Q |
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| T |
6842462 |
aaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccact |
6842363 |
T |
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| Q |
108 |
ttatcatttggattaagtgaggttaagaactctaacaaaggcttagcatactcagcaaaagtatgaacatcttcaattttgtgtgtgttgacgccacaag |
207 |
Q |
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| T |
6842362 |
ttttcatttggatcaagtgaggttaagaactctaacaaaggcttagcatactcagcaaaagtatgaacatcttcaattttgtgtgtgttgatgccacaag |
6842263 |
T |
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| Q |
208 |
ctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaactccaaactccaacgctagcaccatgtactagaac |
307 |
Q |
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| T |
6842262 |
ctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaactccaagctccaacgctaacaccatgtactagaac |
6842163 |
T |
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| Q |
308 |
aaaatgcttctgtttttggttcattttcaattcagacattattatggttttcttctatgcaacttttggtacttctttgctaaatatagaaagatgtgaa |
407 |
Q |
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| T |
6842162 |
aaaatgcttctgtttttggttcattttcaattcagacattattatggttttcttctatgcaacttttggtacttctttgctaaatatagaaagatgtgaa |
6842063 |
T |
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| Q |
408 |
atcgaaaacgaatttggtaggtctgagctatctgtttcagccaatcattgaagactaatcaatcgtttatcgttatctttcattgaatacaatttcaag |
506 |
Q |
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| T |
6842062 |
atccaaaacgagtttggtaggtctgagctatctgtttcagccaatcattgaagactaatcaatcgtttatcgttatctttcattgaataaaatttcaag |
6841964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 6833231 - 6832912
Alignment:
| Q |
8 |
aaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccact |
107 |
Q |
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| T |
6833231 |
aaaagcagctaagaaaattccaactaaaatttttgtaggaaaattttccattgcaagggctatactcattcctccaaagctatgtcccacaaaaactact |
6833132 |
T |
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| Q |
108 |
ttatcatttggattaagtgaggttaagaactctaacaaaggcttagcatactcagcaaaagtatgaacatcttcaattttgtgtgtgttgacgccacaag |
207 |
Q |
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| T |
6833131 |
ttttcatttggaccaagtgaggccatgaaatctaacaaaggcttagaatactcaacaaaagtatcaacatcttcaacttcctcagtgttgatgccactag |
6833032 |
T |
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| Q |
208 |
ctgcaaggtcaaatgttgtgactttgtgacctacagattctaactgtggtttaagcttgtaccaactccaaactccaacgctagcaccatgtactagaac |
307 |
Q |
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| T |
6833031 |
ctgcaagatcaagtgctgtgaccttgtgaccagatgattctaaacgtggcttaagcttgtaccaattccaggcacccatgccagaaccatgtaccagaac |
6832932 |
T |
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| Q |
308 |
aaaatgcttctgtttttggt |
327 |
Q |
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| T |
6832931 |
aaaatgcatttgtttttggt |
6832912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 12532593 - 12532710
Alignment:
| Q |
52 |
tttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccactttatcatttggattaagtgaggttaagaactctaacaaaggctt |
151 |
Q |
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| T |
12532593 |
tttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccactttttcatttggatcaagtgaggctaagaactctaacaaaggctt |
12532692 |
T |
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| Q |
152 |
agcatactcagcaaaagt |
169 |
Q |
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| T |
12532693 |
agcatgctcagcaaaagt |
12532710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 33760428 - 33760536
Alignment:
| Q |
8 |
aaaagcagctaagaaaattccaacttcaattttttcaggaaatttttccattgcaagagctatactcattcctccaaagctatgtccaacaagaaccact |
107 |
Q |
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|||||||| |||||||| ||||| ||| ||||| ||||||| |||||||||||||||||| || | |||||||| ||||| || ||||||| ||| |
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| T |
33760428 |
aaaagcagttaagaaaacaccaacagcaaccttttctggaaattgttccattgcaagagctatgctaagtcctccaagactatgacccacaagaatcacc |
33760527 |
T |
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| Q |
108 |
ttatcattt |
116 |
Q |
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| T |
33760528 |
ttttcattt |
33760536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 33760661 - 33760737
Alignment:
| Q |
241 |
cagattctaactgtggtttaagcttgtaccaactccaaactccaacgctagcaccatgtactagaacaaaatgcttc |
317 |
Q |
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| T |
33760661 |
cagattctaaacgtggcttgatcttgtaccaactccaagcaccatggcaagcaccatgtacaagaacataatgcttc |
33760737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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