View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5040-Insertion-12 (Length: 494)
Name: NF5040-Insertion-12
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 358 - 494
Target Start/End: Original strand, 10470124 - 10470260
Alignment:
| Q |
358 |
gctatgcgttctttattctgctgcgtattacggaccacgtcacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc |
457 |
Q |
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| T |
10470124 |
gctatgcgttctttattctgctgcgtattacggaccacgttacctattgagcaaggagcagcatttcaactctcgagtacttgagagatcatgatgtttc |
10470223 |
T |
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| Q |
458 |
ttttctggaactttatgttctttcactattggattgg |
494 |
Q |
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| T |
10470224 |
ttttcaggaactttatgttctttcactgttggattgg |
10470260 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 10470051 - 10470126
Alignment:
| Q |
12 |
atggcggtcttcccatttgggagaccagaccatatggttctctagcatctagatagtatggaaaactaaagatgct |
87 |
Q |
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| T |
10470051 |
atggcggtcttcccatttgggagacccgaccatatggttctctagcatctagatagtatggaaaactagagatgct |
10470126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 10616367 - 10616232
Alignment:
| Q |
102 |
aaaggttttgagttggagaaggttgtggaggaggcaaaagttctatcttagaaaattcttaaaaccataacaagaggaattgtttatgcaagaaataagt |
201 |
Q |
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| T |
10616367 |
aaaggttttgattgggagaagattgtggaggagacataaatcctatcttggaaactccatagcaccaaatcaagaggattcatttatgcaatgaatcagt |
10616268 |
T |
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| Q |
202 |
ggcttgagaacaagttgagctgtttggggacagtaa |
237 |
Q |
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| T |
10616267 |
ggcttgaaaaccctttgagctgtttggggatagtaa |
10616232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 178
Target Start/End: Complemental strand, 30950217 - 30950131
Alignment:
| Q |
93 |
ttttctcataaaggttttgagttggagaaggttgtggaggag-gcaaaagttctatcttagaaaattcttaaaaccataacaagagg |
178 |
Q |
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| T |
30950217 |
ttttctcataaaggttatgattgggataaggttgcggaggagaccaaaaattctatcttaggagatgcttaaaaccaaatcaagagg |
30950131 |
T |
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