View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-14 (Length: 480)

Name: NF5040-Insertion-14
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-14
NF5040-Insertion-14
[»] chr3 (13 HSPs)
chr3 (36-480)||(475912-476356)
chr3 (110-453)||(480898-481247)
chr3 (158-267)||(1186226-1186335)
chr3 (158-267)||(1204290-1204399)
chr3 (158-333)||(778115-778290)
chr3 (165-267)||(1304691-1304793)
chr3 (172-452)||(5360828-5361107)
chr3 (163-280)||(7118764-7118881)
chr3 (199-280)||(13490896-13490977)
chr3 (172-226)||(20948691-20948745)
chr3 (200-273)||(7125963-7126036)
chr3 (154-259)||(7058800-7058905)
chr3 (172-220)||(20977366-20977414)
[»] chr4 (2 HSPs)
chr4 (158-333)||(52186822-52186998)
chr4 (402-435)||(52187067-52187100)
[»] chr2 (4 HSPs)
chr2 (152-285)||(43864014-43864148)
chr2 (152-285)||(43867506-43867639)
chr2 (152-261)||(43875206-43875315)
chr2 (125-329)||(38989076-38989280)
[»] scaffold0438 (1 HSPs)
scaffold0438 (158-261)||(5312-5415)
[»] chr5 (2 HSPs)
chr5 (179-261)||(33958064-33958146)
chr5 (187-280)||(28091091-28091184)
[»] chr7 (3 HSPs)
chr7 (137-275)||(6889120-6889258)
chr7 (137-281)||(32413598-32413742)
chr7 (199-259)||(6844163-6844223)
[»] chr6 (5 HSPs)
chr6 (163-277)||(7115510-7115624)
chr6 (163-277)||(7120582-7120696)
chr6 (163-277)||(7123986-7124100)
chr6 (163-243)||(8656649-8656729)
chr6 (163-243)||(7175432-7175512)
[»] chr8 (1 HSPs)
chr8 (136-259)||(27701888-27702011)
[»] chr1 (1 HSPs)
chr1 (178-267)||(28928434-28928523)


Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 36 - 480
Target Start/End: Original strand, 475912 - 476356
Alignment:
Q  36 ttaatagttagtcttttctctaatcaatttaatttctcagacaacaatggagagacgcaagacgaaacttaaaaacgacaacaaacatgaagaggacttt 135  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  475912 ttaatagttagttttttctctaatcaatttaatttctcagacaacaatggagagacgcaagacgaaacataagaacgacaacaaacatgaagaggacttt 476011  T
Q  136 atcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatc 235  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  476012 atcagtgatttatcagattgtattctccttcacacactctcctttttaaacgccaaagaagccgttcaaacttgtattttatccaaaagatggatcaatc 476111  T
Q  236 tctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgtgatca 335  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476112 tctggaatactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgtgatca 476211  T
Q  336 ctcaagtgctatcagttctctctgtttgcacaacaatcattttatggggattagactatacaaaaagatcatagaatacactttttcacacaatgtccaa 435  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476212 ctcaagtgctatccgtgctctctgtttgcactacaatcattttatggggattagactatacaaaaagatcatagaatacactttttcacacaatgtccaa 476311  T
Q  436 tgctttcgaatcaattataataatattcaacaccatccaccatgc 480  Q
     ||||||||||||||||||||| ||||||||||| ||||||||||    
T  476312 cgctttcgaatcaattataatagtattcaacaccttccaccatgc 476356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 110 - 453
Target Start/End: Original strand, 480898 - 481247
Alignment:
Q  110 acgacaacaaacatgaagaggactttatcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttg 209  Q
    |||||| |||| ||||||| ||| |||||||||||||||||  |||  |||||| || || |||||||||||||||||||||||||||||||||||||||    
T  480898 acgacagcaaaaatgaagacgaccttatcagtgatttatccggttgcgttctccatctcatactctcctttttaaacgccaaagaggccgttcaaacttg 480997  T
Q  210 tattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||   | |||||| || |||||  ||    
T  480998 tattttatccaaaagatggatcaatctctggaagactcttcccacgcttaccttaagttcttcaaactttaggacccaaagaagtttggaacaattcgtg 481097  T
Q  310 tctcagattttctctcttcgtgatcactcaagtgctatcagttctctctg------tttgcacaacaatcattttatggggattagactatacaaaaaga 403  Q
    | ||| ||||| || ||||| ||||||||||  ||||||  | |||||||       |||||| |||||||||||||||||||||| ||||||  || ||    
T  481098 tatcatattttgtcgcttcgagatcactcaacagctatccatactctctgcttgcagttgcactacaatcattttatggggattagcctataccgaatga 481197  T
Q  404 tcatagaatacactttttcacacaatgtccaatgctttcgaatcaattat 453  Q
    | ||||||||  ||||||||||||||||||||   |||||||||| ||||    
T  481198 ttatagaatatgctttttcacacaatgtccaacagtttcgaatcagttat 481247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 1186226 - 1186335
Alignment:
Q  158 ttctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccct 257  Q
    |||||| ||||| |||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||    
T  1186226 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1186325  T
Q  258 tacactaagt 267  Q
    |||| |||||    
T  1186326 tacattaagt 1186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 1204290 - 1204399
Alignment:
Q  158 ttctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccct 257  Q
    |||||| ||||| |||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||    
T  1204290 ttctccatcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactct 1204389  T
Q  258 tacactaagt 267  Q
    |||| |||||    
T  1204390 tacattaagt 1204399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 158 - 333
Target Start/End: Complemental strand, 778290 - 778115
Alignment:
Q  158 ttctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccct 257  Q
    |||||||||||| ||| || ||||| || ||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| | ||| ||||| ||    
T  778290 ttctccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtccaaaagatggatcaatctctggaaaattctacccactct 778191  T
Q  258 tacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgtgat 333  Q
    |||| ||||||||||| ||||||| |||| |   ||||| ||  ||||  | ||||||||||| ||||||||||||    
T  778190 tacattaagttcttcacactttagaacctccgacagttttgaagaattcgtttctcagattttgtctcttcgtgat 778115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 1304793 - 1304691
Alignment:
Q  165 tcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacacta 264  Q
    ||||| |||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||| ||    
T  1304793 tcacatactctcctttttgaatgccaaagaggcagttcaaacttgcattttatcgaaaagatggatcaatctctggaagactctttccactcttacatta 1304694  T
Q  265 agt 267  Q
    |||    
T  1304693 agt 1304691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 452
Target Start/End: Complemental strand, 5361107 - 5360828
Alignment:
Q  172 ctctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagttctt 271  Q
    |||||||||||||||| |||| | ||| | |||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||| || ||| || |     
T  5361107 ctctcctttttaaacgtcaaaaaagccatccaaacttgcattttatccaaaagatggaccaatctctggaagactcttccaactcttgcattaaattttc 5361008  T
Q  272 caaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctctcttcgtgatcactcaagtgctatcagttctctctgtttgcacaacaa 371  Q
       | |||||||||  || ||||||| | ||||| || ||||||||||| |||||| | ||| ||||||  |||||  || ||||| |||||||||  |     
T  5361007 ggcaatttaggaccaaca-aagtttccaacaattcctttctcagattttatctcttggcgatgactcaaccgctattcgtgctctccgtttgcacagtag 5360909  T
Q  372 tcattttatggggattagactatacaaaaagatcatagaatacactttttcacacaatgtccaatgctttcgaatcaatta 452  Q
    |  ||  || | | |||| ||||||  ||||||  |||||||| |||||||||||| |||||||  ||||| |||||||||    
T  5360908 tacttcgatagagcttagcctatacggaaagattctagaatacgctttttcacacagtgtccaacactttcaaatcaatta 5360828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 7118764 - 7118881
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacac 262  Q
    ||||||| |||||||| ||| || | |||| |  |||||||||||| |||| | |||||||||||||  ||||| ||||||  |||||||||||||||||    
T  7118764 cttcacatactctcctctttgaaagtcaaacaaaccgttcaaacttctattctctccaaaagatggaaaaatctatggaagcatcttcccacccttacac 7118863  T
Q  263 taagttcttcaaacttta 280  Q
    ||| ||||||| ||||||    
T  7118864 taacttcttcacacttta 7118881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 13490977 - 13490896
Alignment:
Q  199 gttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaacttta 280  Q
    ||||||||||  |||||||||||||||||||  ||| | ||||||| |||||||||||||||| ||| | ||||| ||||||    
T  13490977 gttcaaactttaattttatccaaaagatggaagaatgtatggaagaatcttcccacccttacattaattgcttcatacttta 13490896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 20948691 - 20948745
Alignment:
Q  172 ctctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagat 226  Q
    |||||||||||||||||| || | ||||||||||||||| ||||||||| |||||    
T  20948691 ctctcctttttaaacgcccaacacgccgttcaaacttgtgttttatccacaagat 20948745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 7125963 - 7126036
Alignment:
Q  200 ttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagttcttca 273  Q
    ||||||||||||| || |||||||||||||  |||||||||||   |||||| ||||||||| ||| |||||||    
T  7125963 ttcaaacttgtatcttgtccaaaagatggaagaatctctggaaacgtcttccaacccttacattaatttcttca 7126036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 7058905 - 7058800
Alignment:
Q  154 tgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttccca 253  Q
    |||||||| |||||||  |||||||||||  || | |||||||| || |||||||||||| | ||||||  |||||  |||||||||||   ||||||||    
T  7058905 tgtattctacttcacattctctcctttttggaccctaaagaggcggtccaaacttgtattctctccaaatcatggaagaatctctggaaatatcttccca 7058806  T
Q  254 ccctta 259  Q
     |||||    
T  7058805 tcctta 7058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 20977366 - 20977414
Alignment:
Q  172 ctctcctttttaaacgccaaagaggccgttcaaacttgtattttatcca 220  Q
    |||||||||||||| ||| || | |||||||||||||| ||||||||||    
T  20977366 ctctcctttttaaatgcccaaaacgccgttcaaacttgcattttatcca 20977414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 158 - 333
Target Start/End: Original strand, 52186822 - 52186998
Alignment:
Q  158 ttctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccct 257  Q
    ||||||| |||  |||||||||| | ||||| ||| ||||||||||||| || ||||| |||||||||||||||| |||||||| || ||||||||| ||    
T  52186822 ttctcctccacctactctcctttctgaacgcaaaacaggccgttcaaacctgcattttgtccaaaagatggatcattctctggaggagtcttcccactct 52186921  T
Q  258 tacactaagttcttcaaactttaggacctg--cacaagtttcgatcaatttctgtctcagattttctctcttcgtgat 333  Q
    |||||||||||||||| |||||||| || |   | |||||| ||| ||||| ||||||||||| ||||||||||||||    
T  52186922 tacactaagttcttcatactttaggtccggaaaaaaagttt-gatgaatttgtgtctcagattctctctcttcgtgat 52186998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 52187067 - 52187100
Alignment:
Q  402 gatcatagaatacactttttcacacaatgtccaa 435  Q
    |||||||||||||||| |||||||||||||||||    
T  52187067 gatcatagaatacactgtttcacacaatgtccaa 52187100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 43864148 - 43864014
Alignment:
Q  152 attgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcc 251  Q
    ||||||||||| |||||| ||| |||||||| || || ||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||    
T  43864148 attgtattctcattcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 43864049  T
Q  252 cac-ccttacactaagttcttcaaactttaggacc 285  Q
     ||   ||||| |||||||||||||||||||||||    
T  43864048 tactaattacattaagttcttcaaactttaggacc 43864014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 152 - 285
Target Start/End: Complemental strand, 43867639 - 43867506
Alignment:
Q  152 attgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcc 251  Q
    ||||||||||| |||||  ||| |||||||| ||||| |||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||  ||||||    
T  43867639 attgtattctcattcacgtactgtcctttttgaacgcaaaagaggccgctcaaacttgcattttgtccaaaagatggatcactctctggaagggtcttcc 43867540  T
Q  252 cacccttacactaagttcttcaaactttaggacc 285  Q
     ||  ||||| |||||||||| ||||||||||||    
T  43867539 tactattacattaagttcttcgaactttaggacc 43867506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 43875315 - 43875206
Alignment:
Q  152 attgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcc 251  Q
    ||||||||||| |||||| | | ||||||||||| || ||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||    
T  43875315 attgtattctcattcacatagtgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcc 43875216  T
Q  252 cacccttaca 261  Q
    ||| ||||||    
T  43875215 cactcttaca 43875206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 125 - 329
Target Start/End: Original strand, 38989076 - 38989280
Alignment:
Q  125 aagaggactttatcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaag 224  Q
    |||| |||||||||||||| ||  || |||   |||||||||||| ||| |||||| ||||||| | | |||| |||||||| ||  |||| ||||||||    
T  38989076 aagacgactttatcagtgacttgaccgattcggttctccttcacatactgtcctttctaaacgcaatacaggctgttcaaacatgcgttttgtccaaaag 38989175  T
Q  225 atggatcaatctctggaagactcttcccacccttacactaagttcttcaaactttaggacctgcacaagtttcgatcaatttctgtctcagattttctct 324  Q
    |||||||| ||||||||||| |||| ||||  ||||||| || |||||| ||| |||| || | | ||| || ||| | ||| |||||| |||||| |||    
T  38989176 atggatcattctctggaagagtctttccactattacacttagatcttcatactctaggcccagaaaaaggtttgatgagtttgtgtctcggattttttct 38989275  T
Q  325 cttcg 329  Q
    |||||    
T  38989276 cttcg 38989280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 5312 - 5415
Alignment:
Q  158 ttctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccct 257  Q
    ||||| |||||| ||| |||||||| ||| | | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||    
T  5312 ttctcattcacatactgtcctttttgaacacaagagaggccgttcaaacatgcattttatccaaaagatggatcaatctctggaagactcttcccactct 5411  T
Q  258 taca 261  Q
    ||||    
T  5412 taca 5415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 33958146 - 33958064
Alignment:
Q  179 ttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttaca 261  Q
    |||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  33958146 ttttgaacaccagagaggccgttcaaacttgcattttatccaaaagatggatcaatctctggaagactcttcacactcttaca 33958064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 28091091 - 28091184
Alignment:
Q  187 gccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagttcttcaaacttta 280  Q
    |||||| | |||||||||||||| ||| | ||||||||||    |||||||||||||  ||||||||||||||   ||| |||||||| |||||    
T  28091091 gccaaacaagccgttcaaacttgcattctctccaaaagattcgacaatctctggaagcgtcttcccacccttaggttaacttcttcaagcttta 28091184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 275
Target Start/End: Original strand, 6889120 - 6889258
Alignment:
Q  137 tcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatct 236  Q
    ||||||| ||| || ||||| || | ||||||| |||||| |||||  || ||| ||| || ||||||||||| ||| ||||||||||||||| ||||||    
T  6889120 tcagtgacttacccgattgtgttattcttcacatactctcttttttggacaccatagacgctgttcaaacttgcattctatccaaaagatggaacaatct 6889219  T
Q  237 ctggaagactcttcccacccttacactaagttcttcaaa 275  Q
    ||||||   |||||| ||||||| | |||||||||||||    
T  6889220 ctggaaatatcttcctacccttatattaagttcttcaaa 6889258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 32413598 - 32413742
Alignment:
Q  137 tcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatct 236  Q
    |||||||||||||  ||||| || | ||||||| |||||||| ||| ||| ||||| | |||||||||||||| ||||| |||| ||||||||  |||||    
T  32413598 tcagtgatttatctgattgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatct 32413697  T
Q  237 ctggaagactcttcccacccttacactaagttcttcaaactttag 281  Q
    |||||||  ||||||  ||||| |  |||| |||||| |||||||    
T  32413698 ctggaagcgtcttccatcccttgcgttaaggtcttcagactttag 32413742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 6844163 - 6844223
Alignment:
Q  199 gttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccaccctta 259  Q
    ||||||||||| ||| ||||||||||||||| |||||| |||||   ||||||||| ||||    
T  6844163 gttcaaacttgcattctatccaaaagatggaacaatctttggaaacatcttcccactctta 6844223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 7115624 - 7115510
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacac 262  Q
    ||||||| |||||| ||||| ||| ||||| | || |||||||||||| |||| |||||||||||||  ||||||||||||  |||||| | ||||| |     
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaa 7115525  T
Q  263 taagttcttcaaact 277  Q
    || ||| ||||||||    
T  7115524 taggttattcaaact 7115510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 7120696 - 7120582
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacac 262  Q
    ||||||| |||||| ||||| ||| ||||| | || |||||||||||| |||| |||||||||||||  ||||||||||||  |||||| | ||||| |     
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaa 7120597  T
Q  263 taagttcttcaaact 277  Q
    || ||| ||||||||    
T  7120596 taggttattcaaact 7120582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 277
Target Start/End: Complemental strand, 7124100 - 7123986
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacac 262  Q
    ||||||| |||||| ||||| ||| ||||| | || |||||||||||| |||| |||||||||||||  ||||||||||||  |||||| | ||||| |     
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttccaagccttaaaa 7124001  T
Q  263 taagttcttcaaact 277  Q
    || ||| ||||||||    
T  7124000 taggttattcaaact 7123986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 8656729 - 8656649
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaag 243  Q
    ||||||| |||||| ||||| ||| ||||| | || |||||||||||| ||||  ||||||||||||  ||||||||||||    
T  8656729 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 8656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 7175512 - 7175432
Alignment:
Q  163 cttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaag 243  Q
    ||||||| ||||||||| |||||  ||||  | || ||||||||||| ||||||||||  |||||||  ||||||||||||    
T  7175512 cttcacatactctccttgttaaaaaccaagcacgcagttcaaacttgcattttatccactagatggaagaatctctggaag 7175432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 27702011 - 27701888
Alignment:
Q  136 atcagtgatttatcccattgtattctccttcacacactctcctttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatc 235  Q
    |||||||||||| || |||| |||||| |||||| |||||||| |||| |  ||||| | ||||||||||||   ||| | |||| |||||||| |||||    
T  27702011 atcagtgatttacccgattgcattctctttcacatactctcctctttagaaaccaaacatgccgttcaaactaccattctttccacaagatggaacaatc 27701912  T
Q  236 tctggaagactcttcccaccctta 259  Q
    |||||||   |||||| |||||||    
T  27701911 tctggaaacgtcttccaaccctta 27701888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 28928523 - 28928434
Alignment:
Q  178 tttttaaacgccaaagaggccgttcaaacttgtattttatccaaaagatggatcaatctctggaagactcttcccacccttacactaagt 267  Q
    |||||||| |||||||| || ||||||||||| ||  | ||||   ||||||  ||||||||||||  |||||||||||||||| |||||    
T  28928523 tttttaaaagccaaagaagctgttcaaacttgcatactctccactcgatggaagaatctctggaagcgtcttcccacccttacattaagt 28928434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University