View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5040-Insertion-18 (Length: 88)
Name: NF5040-Insertion-18
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5040-Insertion-18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 77; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 37188781 - 37188861
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacagaatatagttccaacaccaaccaaaccaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37188781 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacaaaatatagttccaacaccaaccaaaccaa |
37188861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 6e-34
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 37893683 - 37893763
Alignment:
| Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacagaatatagttccaacaccaaccaaaccaa |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
37893683 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcagccaacaaaatatagttccaacaccaaccaaaccaa |
37893763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University