View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5040-Insertion-2 (Length: 1120)

Name: NF5040-Insertion-2
Description: NF5040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5040-Insertion-2
NF5040-Insertion-2
[»] chr3 (3 HSPs)
chr3 (48-214)||(49992567-49992733)
chr3 (7-53)||(49992764-49992810)
chr3 (978-1027)||(44654706-44654755)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 1e-81; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 48 - 214
Target Start/End: Complemental strand, 49992733 - 49992567
Alignment:
Q  48 aatgtatgtaaggtttataaatggatgcttgaaatcaaggagggtttgacaaaattatgatggtacaatggttttttgttgaagctctcatatgtaattt 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49992733 aatgtatgtaaggtttataaatggatgcttgaaatcaaggagggtttgacaaaattatgatggtacaatggttttttgttgaagctctgatatgtaattt 49992634  T
Q  148 ttgaaaaaatattgtattaccataattttgataaactcatcgtaaattcaaatattcattaaaaatg 214  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49992633 ttgaaaaaatattttattaccataattttgataaactcatcgtaaattcaaatgttcattaaaaatg 49992567  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 49992810 - 49992764
Alignment:
Q  7 aatttgctactagtaactgcttatgcatagtgtttcctagtaatgta 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49992810 aatttgctactagtaactgcttatgcatagtgtttcctagtaatgta 49992764  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 978 - 1027
Target Start/End: Original strand, 44654706 - 44654755
Alignment:
Q  978 tttaatcacttaaaatttggtcattcaactcagttaattattgtcatgtc 1027  Q
    ||||||||||||||| ||||||  ||| |||||||||||| |||||||||    
T  44654706 tttaatcacttaaaaattggtccctcagctcagttaattactgtcatgtc 44654755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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